Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0887
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 153 2e-38
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 67 2e-12
SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar... 61 1e-10
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces... 60 2e-10
SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyc... 53 3e-08
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 53 4e-08
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 52 9e-08
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 51 2e-07
SPBC18H10.03 |tif35||translation initiation factor eIF3g|Schizos... 50 4e-07
SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 47 2e-06
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 47 2e-06
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 47 2e-06
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch... 46 4e-06
SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyce... 46 6e-06
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc... 46 6e-06
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 45 1e-05
SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protei... 44 2e-05
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 44 2e-05
SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity... 42 5e-05
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc... 42 9e-05
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo... 42 9e-05
SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein Sap49|Schizo... 41 2e-04
SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po... 40 3e-04
SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|ch... 40 3e-04
SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm type|Schizos... 40 4e-04
SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating tra... 39 5e-04
SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces... 39 5e-04
SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog |Schi... 39 7e-04
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 36 0.003
SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 36 0.005
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 36 0.006
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 35 0.008
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 34 0.014
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 34 0.014
SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 33 0.043
SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces ... 33 0.043
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy... 32 0.057
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 32 0.075
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 31 0.17
SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomy... 30 0.23
SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein Cwf23|Schiz... 30 0.23
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 29 0.70
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ... 29 0.70
SPAC2G11.03c |vps45||vacuolar sorting protein Vps 45|Schizosacch... 29 0.70
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ... 28 1.2
SPAC1952.05 |gcn5||histone acetyltransferase Gcn5|Schizosaccharo... 27 1.6
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 27 2.1
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 26 3.7
SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces po... 26 3.7
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po... 26 4.9
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos... 25 6.5
>SPBC660.15 |||mRNA cleavage factor complex subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 474
Score = 153 bits (371), Expect = 2e-38
Identities = 76/195 (38%), Positives = 119/195 (61%), Gaps = 6/195 (3%)
Frame = +1
Query: 43 NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAE-APGRDDDRKLFVGGLSWETTDKELRD 219
+ +N D +NQ + +G +S + N+ E +P +D K+F+GGL+WETTD LRD
Sbjct: 123 DGENSKNDNYNENQ-SALTGSGAMESNEDNAEETSPFNREDGKMFIGGLNWETTDDSLRD 181
Query: 220 HFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 399
+F +GE+ V D TGRSRGF F+ FK P+ +++VM+ EH ++ K +DPK+A R
Sbjct: 182 YFEQFGEVLDCTVMRDSTTGRSRGFGFLTFKNPKCVNEVMSK-EHHLDGKIIDPKRAIPR 240
Query: 400 H-----GKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQV 564
K+FVGG+ + +++E RNFF++FG +L+ + DK + +GF F+T+E+E
Sbjct: 241 EEQEKTAKMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESA 300
Query: 565 VNDLLKTPKRTIGGK 609
V + P TI GK
Sbjct: 301 VEATMSQPYITIHGK 315
Score = 59.7 bits (138), Expect = 3e-10
Identities = 25/75 (33%), Positives = 45/75 (60%)
Frame = +1
Query: 166 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAA 345
K+FVGG+ + T++E R+ F +G + + D +TGR RGF F+ ++ +++ M+
Sbjct: 248 KMFVGGVPGDCTEEEFRNFFNQFGRVLDATLMMDKDTGRPRGFGFVTYENESAVEATMSQ 307
Query: 346 GEHTINNKKVDPKKA 390
TI+ K V+ K+A
Sbjct: 308 PYITIHGKPVEVKRA 322
>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 500
Score = 66.9 bits (156), Expect = 2e-12
Identities = 48/160 (30%), Positives = 75/160 (46%), Gaps = 25/160 (15%)
Frame = +1
Query: 145 PGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 318
P +D + +FVG LSW D+ L F YG I V D +GRS+G+ ++ F+ P
Sbjct: 255 PSQDSNETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETP 314
Query: 319 ESIDKVMAA-GEHTINNKKV-----DPKK------AKARHGK-----------IFVGGLS 429
E+ +AA G I+ + V +P+ A+ R G +FVG LS
Sbjct: 315 EAAKAAVAANGTKEIDGRMVNLDLSNPRPANPQPYAQQRAGNFGDQLSEPSDTVFVGNLS 374
Query: 430 SEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 549
++D++ F G I + +P D + KGF ++TF
Sbjct: 375 FNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTF 414
Score = 56.4 bits (130), Expect = 3e-09
Identities = 25/64 (39%), Positives = 38/64 (59%)
Frame = +1
Query: 169 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 348
+FVG LS+ T+ +L FG G+I+SI + TDP +GR +GF ++ F +S K +
Sbjct: 368 VFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCVEMN 427
Query: 349 EHTI 360
H I
Sbjct: 428 GHFI 431
Score = 37.5 bits (83), Expect = 0.002
Identities = 16/51 (31%), Positives = 28/51 (54%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 561
+FVG LS + D + F E+GTI+ + D + KG+ ++ FE+ +
Sbjct: 265 VFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPE 315
>SPAC57A7.04c |pabp||mRNA export shuttling protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 653
Score = 61.3 bits (142), Expect = 1e-10
Identities = 42/142 (29%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Frame = +1
Query: 169 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 348
L+VG L T+ L + F + G + SI V D T RS G+A++ F E +K +
Sbjct: 82 LYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDEL 141
Query: 349 EHTINN--------KKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPF 504
+T+ + DP K G +F+ L I + + + FS FG IL ++
Sbjct: 142 NYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAV 201
Query: 505 DKTKNQRKGFCFITFESEQVVN 570
D+ N KG+ F+ F+S + N
Sbjct: 202 DELGN-AKGYGFVHFDSVESAN 222
Score = 46.4 bits (105), Expect = 3e-06
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +1
Query: 169 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVM 339
LF+ L E D+ L+ F A+G I S + TD G+S+GF F+ + PE +K +
Sbjct: 366 LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTD-EQGKSKGFGFVCYTTPEEANKAV 421
>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 369
Score = 60.1 bits (139), Expect = 2e-10
Identities = 28/97 (28%), Positives = 50/97 (51%)
Frame = +1
Query: 67 ITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIE 246
I ++ +G S ++ ++ LFVG L +ETTD +L++HFG G+I
Sbjct: 196 IKSNTDFSGRPSKPANTLSKTASIQSSKKEPSSILFVGNLDFETTDADLKEHFGQVGQIR 255
Query: 247 SINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHT 357
+ + T +TG+ +GF F+ F ++ K M G ++
Sbjct: 256 RVRLMTFEDTGKCKGFGFVDFPDIDTCMKAMELGHNS 292
Score = 33.1 bits (72), Expect = 0.033
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 549
+FVG L E +D +++ F + G I V + + + KGF F+ F
Sbjct: 230 LFVGNLDFETTDADLKEHFGQVGQIRRVRLMTFEDTGKCKGFGFVDF 276
>SPAC16E8.06c |nop12||RNA-binding protein Nop12|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 438
Score = 53.2 bits (122), Expect = 3e-08
Identities = 24/67 (35%), Positives = 38/67 (56%)
Frame = +1
Query: 151 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 330
+D R +FVG L++E ++ L +FG G I+ + + DP T +GFA+I FK +D
Sbjct: 266 QDTKRCVFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVD 325
Query: 331 KVMAAGE 351
K + E
Sbjct: 326 KALLLNE 332
Score = 36.3 bits (80), Expect = 0.003
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 579
+FVG L+ E ++ + +F + G+I V + D N KGF +I F+ V+ L
Sbjct: 272 VFVGNLAFEAEEEPLWRYFGDCGSIDYVRIVRDPKTNLGKGFAYIQFKDTMGVDKAL 328
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 52.8 bits (121), Expect = 4e-08
Identities = 32/97 (32%), Positives = 55/97 (56%), Gaps = 5/97 (5%)
Frame = +1
Query: 133 SAEAPGRDDDRK--LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIV 306
S G+++DRK LFVG L +++ + L+ HF G++ S+ + TD +GR +G+AF+
Sbjct: 80 SKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTDKTSGRQKGYAFVE 139
Query: 307 FKAPES--IDKVMAAGEHTI-NNKKVDPKKAKARHGK 408
F P++ I K + HTI +K++ + GK
Sbjct: 140 FINPKTDVISKALKF-HHTIYKERKINIELTAGGGGK 175
Score = 42.7 bits (96), Expect = 4e-05
Identities = 22/74 (29%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Frame = +1
Query: 349 EHTINNKKVDPKKAKARHGK-------IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFD 507
+H+++N K+K + GK +FVG L + S + ++ F G + V +P D
Sbjct: 67 KHSVSNPPHKTLKSKRQKGKNNDRKVILFVGNLPKDSSVETLQLHFKRAGQVPSVRIPTD 126
Query: 508 KTKNQRKGFCFITF 549
KT ++KG+ F+ F
Sbjct: 127 KTSGRQKGYAFVEF 140
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 51.6 bits (118), Expect = 9e-08
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 2/79 (2%)
Frame = +1
Query: 157 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 336
D + ++VG + + T +EL+ HF + G + + + D TG +GFA+I F P +
Sbjct: 53 DAQSVYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNA 112
Query: 337 MAAGEHTINNK--KVDPKK 387
+ ++ + KV PK+
Sbjct: 113 LLLNGSMLHERPLKVTPKR 131
Score = 36.3 bits (80), Expect = 0.003
Identities = 15/57 (26%), Positives = 31/57 (54%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 579
++VG + ++ +E+++ F+ G++ V + DK KGF +I F +V + L
Sbjct: 57 VYVGNVDYSVTPEELQSHFASCGSVNRVTILCDKFTGHPKGFAYIEFSEPSLVPNAL 113
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 50.8 bits (116), Expect = 2e-07
Identities = 25/79 (31%), Positives = 42/79 (53%)
Frame = +1
Query: 349 EHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRK 528
E TI K + K + + G ++VG L + ++R +FS+FG +L + M ++ K
Sbjct: 87 EKTIKKKVSENKNLQKKKGVLYVGRLPHGFYEKQMRMYFSQFGPVLRLRMSRNRKTGSSK 146
Query: 529 GFCFITFESEQVVNDLLKT 585
+ FI FES V N + +T
Sbjct: 147 HYAFIEFESLDVANVVAET 165
>SPBC18H10.03 |tif35||translation initiation factor
eIF3g|Schizosaccharomyces pombe|chr 2|||Manual
Length = 282
Score = 49.6 bits (113), Expect = 4e-07
Identities = 23/53 (43%), Positives = 34/53 (64%)
Frame = +1
Query: 151 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVF 309
RDD L V LS +T ++ELRD F +G I+ + + D TGR++GFAF+ +
Sbjct: 198 RDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
Score = 37.9 bits (84), Expect = 0.001
Identities = 17/56 (30%), Positives = 30/56 (53%)
Frame = +1
Query: 382 KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 549
K+ + + V LS + ++E+R+ F FG I V + DK + KGF F+++
Sbjct: 195 KRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRVYLAKDKETGRAKGFAFVSY 250
>SPBC4F6.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 674
Score = 47.2 bits (107), Expect = 2e-06
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 3/76 (3%)
Frame = +1
Query: 94 NAENGGGDSQDHNSAEAPGRDDDR---KLFVGGLSWETTDKELRDHFGAYGEIESINVKT 264
+ E+ G S D NS RD++ +FV L +E T++EL +HF +G + +
Sbjct: 251 DVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAKLVK 310
Query: 265 DPNTGRSRGFAFIVFK 312
DP T RS G FI F+
Sbjct: 311 DPATDRSLGRGFIKFR 326
Score = 44.0 bits (99), Expect = 2e-05
Identities = 26/69 (37%), Positives = 38/69 (55%)
Frame = +1
Query: 169 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 348
LFV L+++T +L + F G I+ V T+P TG +RG+ F+ F E D AA
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTFSMLE--DAQRAAK 64
Query: 349 EHTINNKKV 375
E + NKK+
Sbjct: 65 E--LKNKKL 71
Score = 34.7 bits (76), Expect = 0.011
Identities = 14/47 (29%), Positives = 26/47 (55%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 549
+FV L+ + D++ NFFS+ G I + + + +G+ F+TF
Sbjct: 7 LFVRNLAFQTKQDDLTNFFSDVGPIKHAVVVTNPETGENRGYGFVTF 53
Score = 31.5 bits (68), Expect = 0.099
Identities = 19/89 (21%), Positives = 42/89 (47%), Gaps = 2/89 (2%)
Frame = +1
Query: 322 SIDKVMAAGEHTINNKKVDP--KKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 495
++D V +G+ + + ++ + + +FV L E ++ E+ N F +FG + +
Sbjct: 248 NVDDVEDSGDSSSDKNSINHEIRDNEGLEDTVFVRNLLFECTEQELYNHFRQFGPLAYAK 307
Query: 496 MPFDKTKNQRKGFCFITFESEQVVNDLLK 582
+ D ++ G FI F E+ + L+
Sbjct: 308 LVKDPATDRSLGRGFIKFRYEKDCQNCLE 336
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 46.8 bits (106), Expect = 2e-06
Identities = 38/153 (24%), Positives = 69/153 (45%), Gaps = 20/153 (13%)
Frame = +1
Query: 157 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 336
D R +FV L+ T +EL D F G + + D +GRS+G A++ F +S+
Sbjct: 238 DRRTVFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAA 297
Query: 337 MA-AGEHTINNKKV-----DPKKAKARHG--------------KIFVGGLSSEISDDEIR 456
+A +G+ + + K KAR ++ V + ++D++++
Sbjct: 298 IALSGKRLLGLPVIVQLTEAEKNRKAREAAELARAASAEIPFHRLCVSNIHFNLTDEDVK 357
Query: 457 NFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 555
F FG I V + D +N+ KGF +I + +
Sbjct: 358 AIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRN 389
Score = 36.7 bits (81), Expect = 0.003
Identities = 16/53 (30%), Positives = 34/53 (64%)
Frame = +1
Query: 166 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 324
+L V + + TD++++ F +G+IE ++++ D + RS+GF +I ++ P S
Sbjct: 341 RLCVSNIHFNLTDEDVKAIFEPFGDIEFVHLQRD-DQNRSKGFGYIQYRNPIS 392
Score = 35.5 bits (78), Expect = 0.006
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 1/66 (1%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLK-T 585
+FV L++ ++ E+ +FF + G + + ++ DK + KG ++ F E V + +
Sbjct: 242 VFVSQLANRLTSRELYDFFEQAGPVRDAQIVRDKISGRSKGVAYVEFCHEDSVQAAIALS 301
Query: 586 PKRTIG 603
KR +G
Sbjct: 302 GKRLLG 307
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 46.8 bits (106), Expect = 2e-06
Identities = 20/69 (28%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +1
Query: 406 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLK 582
++F+ L+ ++D++++ F FG + +V MP DK N KGF +I F +++ V L+
Sbjct: 324 RLFLRNLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLE 383
Query: 583 TPKRTIGGK 609
+ G+
Sbjct: 384 LDAKPFQGR 392
>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 261
Score = 46.0 bits (104), Expect = 4e-06
Identities = 20/53 (37%), Positives = 33/53 (62%)
Frame = +1
Query: 154 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 312
D + +F+ LS++T + ++ F YG IE I V + TG+S G+AF+VF+
Sbjct: 97 DPYKTMFLSRLSYDTKESDIEREFTRYGPIERIRVVRNKVTGKSMGYAFVVFE 149
>SPAC25G10.01 ||SPAC2C4.18|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 297
Score = 45.6 bits (103), Expect = 6e-06
Identities = 22/82 (26%), Positives = 41/82 (50%)
Frame = +1
Query: 76 DNQLNGNAENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESIN 255
+++++ N E+ D ++ SA + LFV G++ + EL+ F +G + +
Sbjct: 72 EDEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVR 131
Query: 256 VKTDPNTGRSRGFAFIVFKAPE 321
+ +P T SRGF F+ F E
Sbjct: 132 IMREPVTKASRGFGFLSFSTVE 153
Score = 44.8 bits (101), Expect = 1e-05
Identities = 23/79 (29%), Positives = 43/79 (54%), Gaps = 3/79 (3%)
Frame = +1
Query: 328 DKVMAAGEHTINNKKVD---PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 498
D+V E T +KK P+ ++ +FV G++S + +DE++ FS+FGT+ V +
Sbjct: 73 DEVDPNNESTALDKKEPQSAPEGSENLGNDLFVSGIASRMQEDELQQIFSKFGTVTHVRI 132
Query: 499 PFDKTKNQRKGFCFITFES 555
+ +GF F++F +
Sbjct: 133 MREPVTKASRGFGFLSFST 151
>SPBC18H10.04c |sce3|tif48|translation initiation factor
eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
Length = 388
Score = 45.6 bits (103), Expect = 6e-06
Identities = 28/100 (28%), Positives = 47/100 (47%)
Frame = +1
Query: 100 ENGGGDSQDHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 279
E G G ++ P + VG LS++ T+ +L D FG + SI + DP T
Sbjct: 74 EGGMGSGYQRDAIPIPS-EPPFTAHVGNLSFDLTENDLGDFFGE--GVTSIRLVIDPLTE 130
Query: 280 RSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAKAR 399
RSRGF ++ F+ +++ +A + + V A+ R
Sbjct: 131 RSRGFGYVEFETADTLSAALALSGEDLMGRPVRITVAEPR 170
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 44.8 bits (101), Expect = 1e-05
Identities = 17/51 (33%), Positives = 33/51 (64%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQ 561
I++G L ++++D+I FSEFG +++ + DK + KGF F+ +E ++
Sbjct: 33 IYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQR 83
Score = 41.5 bits (93), Expect = 9e-05
Identities = 17/56 (30%), Positives = 32/56 (57%)
Frame = +1
Query: 157 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPES 324
D +++G L ++ + ++ F +GE IN+ D TG+S+GFAF+ ++ S
Sbjct: 29 DSAYIYIGNLDFDLNEDDILCVFSEFGEPVDINLVRDKETGKSKGFAFLKYEDQRS 84
>SPBC660.11 |tcg1|mug187|single-stranded telomeric binding protein
Tgc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 348
Score = 44.0 bits (99), Expect = 2e-05
Identities = 24/93 (25%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
Frame = +1
Query: 319 ESIDKVMAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEM 498
+ ++ + A H + P + +A ++FVG LS+ EIR+ F GT+ +V +
Sbjct: 17 DQVEASVDAAVHASAEQSNTPAQ-QADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTI 75
Query: 499 PFDKTKNQRK----GFCFITFESEQVVNDLLKT 585
PF + + + G F+TF +++ V+ ++T
Sbjct: 76 PFRRVRRGTRLVPSGIAFVTFNNQEDVDKAIET 108
Score = 40.3 bits (90), Expect = 2e-04
Identities = 30/99 (30%), Positives = 46/99 (46%), Gaps = 8/99 (8%)
Frame = +1
Query: 115 DSQDHNSAE---APGRD-DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGR 282
D+ H SAE P + DD ++FVG LS T E+R F G + + +
Sbjct: 24 DAAVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRG 83
Query: 283 SR----GFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 387
+R G AF+ F E +DK + T+N K +D ++
Sbjct: 84 TRLVPSGIAFVTFNNQEDVDKAI----ETLNGKTLDDRE 118
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 43.6 bits (98), Expect = 2e-05
Identities = 23/68 (33%), Positives = 38/68 (55%)
Frame = +1
Query: 124 DHNSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI 303
D+N + G + ++FV +S T ++LR HF ++GE+ +++K +P TG S G I
Sbjct: 82 DYNE-NSLGPEPPTQVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCI 140
Query: 304 VFKAPESI 327
F SI
Sbjct: 141 SFDKRSSI 148
Score = 34.3 bits (75), Expect = 0.014
Identities = 11/55 (20%), Positives = 29/55 (52%)
Frame = +1
Query: 406 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVN 570
++FV +S ++ +++R F FG + ++++ + G C I+F+ ++
Sbjct: 95 QVFVSNISPLVTSEQLRYHFKSFGEVFDLDLKLNPYTGTSLGLCCISFDKRSSIS 149
>SPBC3B9.11c |ctf1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ctf1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 363
Score = 42.3 bits (95), Expect = 5e-05
Identities = 18/75 (24%), Positives = 40/75 (53%)
Frame = +1
Query: 169 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAG 348
+FVG + ++ +++++ + F G +++ + DP TG +G+ F F E+ A
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSET----TAMA 64
Query: 349 EHTINNKKVDPKKAK 393
+NN ++ P+K +
Sbjct: 65 VRKLNNSELGPRKIR 79
Score = 31.9 bits (69), Expect = 0.075
Identities = 15/69 (21%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT-FESEQVVNDLLKT 585
+FVG + ++S+ ++ F++ G + ++ D KG+ F F+SE + K
Sbjct: 9 VFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVRKL 68
Query: 586 PKRTIGGKE 612
+G ++
Sbjct: 69 NNSELGPRK 77
>SPAC328.05 |||RNA-binding protein involved in export of
mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 41.5 bits (93), Expect = 9e-05
Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Frame = +1
Query: 169 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK----APESIDKV 336
++VG L W T+D+ L D F G + + +P TGRS+GF + F+ A SI+K+
Sbjct: 282 IYVGNLPWATSDRNLLDLFTDIGSVIRARIAYEP-TGRSKGFGVVQFENENDAASSIEKL 340
>SPBC13A2.01c |||nuclear cap-binding complex small
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 182
Score = 41.5 bits (93), Expect = 9e-05
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 2/94 (2%)
Frame = +1
Query: 322 SIDKVMAAGEHTINNKKVDPKKAKA--RHGKIFVGGLSSEISDDEIRNFFSEFGTILEVE 495
SI ++ A + I K D + A + ++VG LS ++++I FS+ G I +
Sbjct: 3 SITRLDAVSPYLIRRFKNDLRALDAVKQSNCVYVGNLSFYTTEEQIYALFSKCGEIRRII 62
Query: 496 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPKRT 597
M D+ GFCF+ + Q D LK RT
Sbjct: 63 MGVDRFTKTPCGFCFVEYFENQDALDSLKYISRT 96
Score = 34.3 bits (75), Expect = 0.014
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Frame = +1
Query: 169 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFI-VFKAPESIDKVMAA 345
++VG LS+ TT++++ F GEI I + D T GF F+ F+ +++D +
Sbjct: 34 VYVGNLSFYTTEEQIYALFSKCGEIRRIIMGVDRFTKTPCGFCFVEYFENQDALDSLKYI 93
Query: 346 GEHTINNKKVDPKKAKA-RHGKIFVGGLSSEISDDEIRNFF 465
+++ + + G+ + G S DE+R F
Sbjct: 94 SRTSLDERIIRADLDHGYEEGRQYGRGASGGQVRDEMREEF 134
>SPAC31G5.01 |sap49|SPAPB1A11.05|RNA-binding protein
Sap49|Schizosaccharomyces pombe|chr 1|||Manual
Length = 335
Score = 40.7 bits (91), Expect = 2e-04
Identities = 27/82 (32%), Positives = 42/82 (51%), Gaps = 2/82 (2%)
Frame = +1
Query: 169 LFVGGLSWETTDKELRDHFGAYGE-IESINVKTDPNTGRSRGFAFIVFKAPESID-KVMA 342
LFVG L ++ L D F A G+ +++ V D N GRS+G+ F+ + + E+ D + A
Sbjct: 101 LFVGNLDPLVDERVLYDTFSALGQLVKAPQVARDEN-GRSKGYGFVSYDSFETADAAIEA 159
Query: 343 AGEHTINNKKVDPKKAKARHGK 408
+ NK + A R GK
Sbjct: 160 MNNQFLMNKPITVSYAFKREGK 181
Score = 38.3 bits (85), Expect = 9e-04
Identities = 28/143 (19%), Positives = 59/143 (41%), Gaps = 8/143 (5%)
Frame = +1
Query: 151 RDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESID 330
R+ D +++G L + TD L + G + +I++ D GF F F + ++
Sbjct: 7 RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66
Query: 331 KV-MAAGEHTINNKKVDPKKAKARHG-------KIFVGGLSSEISDDEIRNFFSEFGTIL 486
+ + K + +A G +FVG L + + + + FS G ++
Sbjct: 67 YACQILNQVKLFGKPIRVNRASQDRGVNTLIGANLFVGNLDPLVDERVLYDTFSALGQLV 126
Query: 487 EVEMPFDKTKNQRKGFCFITFES 555
+ + KG+ F++++S
Sbjct: 127 KAPQVARDENGRSKGYGFVSYDS 149
>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1014
Score = 39.9 bits (89), Expect = 3e-04
Identities = 17/81 (20%), Positives = 43/81 (53%)
Frame = +1
Query: 157 DDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKV 336
+ R+L+V + ++ +K++ F YG++ES+ + N + +GF ++V + +
Sbjct: 755 EGRELYVTNIDFKVNEKDVETFFRDYGQVESVRIPKRFN--QHKGFGYVVMTTNQDAENA 812
Query: 337 MAAGEHTINNKKVDPKKAKAR 399
++A + N+ ++ +K R
Sbjct: 813 LSAAGKQLGNRVLNVVLSKPR 833
>SPAC22E12.02 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 219
Score = 39.9 bits (89), Expect = 3e-04
Identities = 18/71 (25%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Frame = +1
Query: 400 HGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDL 576
H ++FVG L ++++D+ + FSE+ ++++ ++ D+ + + +GF F++F +S+Q +
Sbjct: 29 HFRLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRDR-EGKTRGFGFVSFKDSDQFLKAW 87
Query: 577 LKTPKRTIGGK 609
+ + IG +
Sbjct: 88 REKNGKYIGSR 98
Score = 35.9 bits (79), Expect = 0.005
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = +1
Query: 166 KLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 312
+LFVG L + D+ L F Y + V D G++RGF F+ FK
Sbjct: 31 RLFVGNLGNDVNDESLYQAFSEYPSLVKTKVVRD-REGKTRGFGFVSFK 78
>SPBC23E6.01c ||SPBPJ758.01|RNA-binding protein, rrm
type|Schizosaccharomyces pombe|chr 2|||Manual
Length = 473
Score = 39.5 bits (88), Expect = 4e-04
Identities = 16/41 (39%), Positives = 27/41 (65%)
Frame = +1
Query: 379 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMP 501
P+ A + +FVGGLS +S++E++ F FG I+ V++P
Sbjct: 295 PQFADTANSTVFVGGLSKFVSEEELKYLFQNFGEIVYVKIP 335
Score = 34.7 bits (76), Expect = 0.011
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = +1
Query: 169 LFVGGLSWETTDKELRDHFGA-YGEIESINVKTDPNTGRSRGFAFIVF 309
+FVG LS + ++ F + Y +S + TDP T SRG+ F+ F
Sbjct: 188 IFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRF 235
Score = 28.7 bits (61), Expect = 0.70
Identities = 16/37 (43%), Positives = 23/37 (62%)
Frame = +1
Query: 169 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTG 279
+FVGGLS +++EL+ F +GEI + VK P G
Sbjct: 305 VFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPPGKG 339
>SPBC17G9.05 |rct1|cyp6|RRM-containing cyclophilin regulating
transcription Rct1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 39.1 bits (87), Expect = 5e-04
Identities = 23/55 (41%), Positives = 31/55 (56%)
Frame = +1
Query: 169 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 333
LFV L+ T D++L F +G+I S V D TG S +AFI F ES++K
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEK 300
Score = 32.3 bits (70), Expect = 0.057
Identities = 15/53 (28%), Positives = 28/53 (52%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVV 567
+FV L+ D+++ FS FG I+ ++ DK + FI F++++ V
Sbjct: 246 LFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESV 298
>SPAC17A2.09c |csx1||RNA-binding protein Csx1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 632
Score = 39.1 bits (87), Expect = 5e-04
Identities = 15/34 (44%), Positives = 25/34 (73%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDK 510
+FVGGL+S +S+ +++ F FG IL +++PF K
Sbjct: 299 VFVGGLASNLSEKDLQVCFQPFGRILNIKIPFGK 332
>SPBC29A3.07c |||U2 snRNP-associated protein Sf3b14 homolog
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 137
Score = 38.7 bits (86), Expect = 7e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Frame = +1
Query: 169 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFK 312
LF+ LS++ T +E+ D FG YG + I + NT ++RG AF+V++
Sbjct: 14 LFIKNLSFKITAEEMYDLFGRYGPVRQIRL---GNTVQTRGTAFVVYE 58
>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 422
Score = 36.3 bits (80), Expect = 0.003
Identities = 13/50 (26%), Positives = 29/50 (58%)
Frame = +1
Query: 169 LFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 318
++VG + +E ++++ D F G ++S + DP +G+ +G+ F + P
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEYHDP 56
Score = 31.1 bits (67), Expect = 0.13
Identities = 10/47 (21%), Positives = 26/47 (55%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 549
++VG + E++++++ + F + G + ++ D Q KG+ F +
Sbjct: 7 VYVGNIPYEMAEEQVIDIFKQSGPVKSFQLVIDPESGQPKGYGFCEY 53
>SPBC13G1.14c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 243
Score = 35.9 bits (79), Expect = 0.005
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF-ESEQVVNDLLKT 585
I V L+ ++ + I F +G I + MP K KG+C+I + +Q N + K
Sbjct: 101 ILVENLTRNVTKEHIAEIFGIYGLIDHIFMPIYKKSELNKGYCYIEYVYHDQAANAVDKM 160
Query: 586 PKRTIGGKE 612
+ G+E
Sbjct: 161 NNAELDGEE 169
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 35.5 bits (78), Expect = 0.006
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 15/111 (13%)
Frame = +1
Query: 124 DHNSAEAPGR--DDDRKLFVGGLSWETTDKELRDHFGAYGEIESI----------NVKTD 267
+++ PG+ D+ ++VG + +D+E+ HF YG++ESI K
Sbjct: 2 NNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKAK 61
Query: 268 PNTGRSRG--FAFIVFKAPESIDKVMA-AGEHTINNKKVDPKKAKARHGKI 411
P G + F+ F ESI++V+ A T+ +K+ K K+
Sbjct: 62 PFKPPKNGVQYGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNPAKL 112
Score = 35.1 bits (77), Expect = 0.008
Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 3/94 (3%)
Frame = +1
Query: 115 DSQDHNSAEAPGRD-DDRKLFVGGLSWE--TTDKELRDHFGAYGEIESINVKTDPNTGRS 285
DS +S P D L+V L T +L D F +G I S + PN+G S
Sbjct: 365 DSLRESSPSIPNSPIDPSNLYVKNLDDTVITCKSQLEDLFSPFGSILSSMLACYPNSGIS 424
Query: 286 RGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKK 387
+G+ F+ F+ E+ + T+N V K+
Sbjct: 425 KGYGFVAFRQIEA----AVRAKDTLNGMMVGKKR 454
Score = 34.3 bits (75), Expect = 0.014
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 15/100 (15%)
Frame = +1
Query: 358 INNKKVD-PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTI-------------LEVE 495
+NN K+ P + + I+VG + S +SD+EI FS++G + E
Sbjct: 1 MNNSKLSVPGQYEDESSTIYVGNIDSRLSDEEIIKHFSKYGQVESIFRRLLDSFYPKEKA 60
Query: 496 MPFDKTKNQRKGFCFITFESEQVVNDLLKTPK-RTIGGKE 612
PF KN + + F+ F + + + ++LK K T+G ++
Sbjct: 61 KPFKPPKNGVQ-YGFVKFVNAESIEEVLKDAKGMTLGQRK 99
>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 478
Score = 35.1 bits (77), Expect = 0.008
Identities = 16/53 (30%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Frame = +1
Query: 406 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK-NQRKGFCFITFESEQ 561
+I+VGGLSS I ++ + FS FG++ +E+ T + F ++ F +++
Sbjct: 6 RIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTPVGTIQRFAYLNFRTDE 58
Score = 33.5 bits (73), Expect = 0.025
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Frame = +1
Query: 160 DRKLFVGGLSWETTDKELRDHFGAYGEIESINV--KTDPNTGRSRGFAFIVFKAPE 321
+++++VGGLS +L F +G + ++ + K+ P G + FA++ F+ E
Sbjct: 4 EKRIYVGGLSSSIESSDLESRFSRFGSVSNLEIINKSTP-VGTIQRFAYLNFRTDE 58
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 34.3 bits (75), Expect = 0.014
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = +1
Query: 406 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 555
KI++ L + +D++ FG +L ++ + KGFCF F++
Sbjct: 311 KIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKN 360
Score = 31.5 bits (68), Expect = 0.099
Identities = 17/74 (22%), Positives = 34/74 (45%), Gaps = 2/74 (2%)
Frame = +1
Query: 154 DDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDK 333
D K+++ L + ++ + +G++ S + + G S+GF F FK P +
Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366
Query: 334 VMAA--GEHTINNK 369
++ G+ T NK
Sbjct: 367 AISGLDGKDTYGNK 380
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 34.3 bits (75), Expect = 0.014
Identities = 18/67 (26%), Positives = 34/67 (50%)
Frame = +1
Query: 361 NNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCF 540
+NKK + ++ +R +++ GL SD+ + + + FG + + D N KG+ F
Sbjct: 283 DNKKSN-MESTSRTRNVYIRGLPPNTSDENLLLYTNRFGKVSSSKAIIDMETNLCKGYGF 341
Query: 541 ITFESEQ 561
FE E+
Sbjct: 342 ACFEEEK 348
>SPAC23A1.09 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 121
Score = 32.7 bits (71), Expect = 0.043
Identities = 14/57 (24%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Frame = +1
Query: 382 KKAKARHGKIF-VGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITF 549
+ AK+ G I V G+ E +++++ + F++FG + + + D+ KG+ I +
Sbjct: 2 RPAKSVEGYIIIVTGVHPEATEEQVEDLFADFGPVKNLHLNLDRRTGYVKGYALIEY 58
>SPBC1D7.04 |mlo3||RNA annealing factor Mlo3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 199
Score = 32.7 bits (71), Expect = 0.043
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 157 DDRKLFVGGLSWETTDKELRDHF-GAYGEIESINVKTDPNTGRSRGFAFIVFKAP 318
++ K+ V L + T+ ++++ F + G + +++ PN GRS+G A I+F P
Sbjct: 53 EESKIIVSNLPTDVTEAQVKELFVKSIGPCKRVSLAYGPN-GRSKGIATIIFSRP 106
>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 654
Score = 32.3 bits (70), Expect = 0.057
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +1
Query: 163 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 273
R +F+G L +KE+ + FG +G+IE I + + N
Sbjct: 299 RNVFIGNLPSSYHEKEIEEAFGKFGKIEHIKILSKKN 335
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIRNFFSEFGTILEVEM 498
+F+G L S + EI F +FG I +++
Sbjct: 301 VFIGNLPSSYHEKEIEEAFGKFGKIEHIKI 330
>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 609
Score = 31.9 bits (69), Expect = 0.075
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 205 KELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP-ESIDKVMAAGEHTINNKKVDP 381
++L + F +G I+S + + P+T S+G+ F+ F P E++ + K++
Sbjct: 435 QQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFV 494
Query: 382 KKAKARHGK 408
A+ R +
Sbjct: 495 NYAEKREDR 503
Score = 27.9 bits (59), Expect = 1.2
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 6/80 (7%)
Frame = +1
Query: 337 MAAGEHTINNKKVDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTK 516
M A E K KK + I+VG L S ++ F FG + M + K
Sbjct: 1 MIALEKLSEKNKRSTKKCEI---SIYVGNLPSTCQSSDLHELFEPFGNFSKFHM-LSRKK 56
Query: 517 NQRKG------FCFITFESE 558
N+ F FITFE++
Sbjct: 57 NKSTDSKSPTLFAFITFENK 76
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 6/62 (9%)
Frame = +1
Query: 409 IFVGGLSSEI--SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFIT----FESEQVVN 570
+FV L I + ++ FS+FG I + + KG+ F++ FE+ Q +N
Sbjct: 421 LFVKNLDDNIVGNTQQLEELFSKFGRIKSCTLASYPSTEISKGYGFVSFSHPFEAVQAIN 480
Query: 571 DL 576
L
Sbjct: 481 TL 482
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 30.7 bits (66), Expect = 0.17
Identities = 15/51 (29%), Positives = 28/51 (54%)
Frame = +1
Query: 439 SDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTPK 591
+++ IR+FFS+FG + +VE+ N C + F S + N+ +P+
Sbjct: 255 NEENIRSFFSKFGVLEKVEL------NPTHHSCVLEFTSHEAANNAWSSPE 299
>SPCC550.02c |cwf5|ecm2|RNA-binding protein Cwf5|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 354
Score = 30.3 bits (65), Expect = 0.23
Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 1/106 (0%)
Frame = +1
Query: 139 EAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAP 318
E P LF+ G+ E D ++R HF YG ++S+ + R++ AF+ FK
Sbjct: 204 EPPKDKKIASLFLIGVEDELADYKIRKHFEQYGPLKSVVC-----SHRAK-CAFVNFKTR 257
Query: 319 ESIDKVMAAGEHTINNKKVDPKKAKARHGK-IFVGGLSSEISDDEI 453
S + +AA N ++ + K + GK +GG E+ + ++
Sbjct: 258 SSAE--IAAAASPDGNVVIEGFRLKVQWGKPRSLGGPEGEVRNAKL 301
>SPCC10H11.02 |cwf23|SPCP31B10.01|DNAJ domain protein
Cwf23|Schizosaccharomyces pombe|chr 3|||Manual
Length = 289
Score = 30.3 bits (65), Expect = 0.23
Identities = 12/43 (27%), Positives = 26/43 (60%)
Frame = +1
Query: 427 SSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFES 555
+ +++D +R+ +S FGT+ V + D +K ++ + I FE+
Sbjct: 176 ADQVNDAYLRSIYSSFGTLQNVVIQKDISKEKKYVYSIIVFET 218
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 28.7 bits (61), Expect = 0.70
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = +1
Query: 163 RKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 273
R +F+G L T+ E+R+ +G I+ I + T+ N
Sbjct: 206 RNVFLGNLPNGITEDEIREDLEPFGPIDQIKIVTERN 242
Score = 28.3 bits (60), Expect = 0.93
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +1
Query: 130 NSAEAPGRDDDRKLFVGGLSWETTDKELRDHFGAYGEIESINVKTDPN 273
N A A R +++G T + L++ F +GEIE +N + N
Sbjct: 403 NIALAVAGGASRNIYIGNADDSLTIERLKEDFEEFGEIEYVNFFREKN 450
Score = 27.9 bits (59), Expect = 1.2
Identities = 11/30 (36%), Positives = 20/30 (66%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIRNFFSEFGTILEVEM 498
+F+G L + I++DEIR FG I ++++
Sbjct: 208 VFLGNLPNGITEDEIREDLEPFGPIDQIKI 237
>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.70
Identities = 13/54 (24%), Positives = 26/54 (48%)
Frame = +1
Query: 373 VDPKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGF 534
+ P K +F+GG++ + + +R+ F FG++ + + N R GF
Sbjct: 396 IPPDSIKVYSRTLFLGGITRSVREPVLRSMFERFGSVQSLIL----NHNYRHGF 445
>SPAC2G11.03c |vps45||vacuolar sorting protein Vps
45|Schizosaccharomyces pombe|chr 1|||Manual
Length = 558
Score = 28.7 bits (61), Expect = 0.70
Identities = 15/72 (20%), Positives = 32/72 (44%)
Frame = +1
Query: 214 RDHFGAYGEIESINVKTDPNTGRSRGFAFIVFKAPESIDKVMAAGEHTINNKKVDPKKAK 393
R++ GE+E V +P + ++F K+ A +++ +++DP K
Sbjct: 344 RENLLEVGEVEQSLVCNEPQSTDFNDIQRLLFSNISENTKLRLAALYSLRFERIDPAKVS 403
Query: 394 ARHGKIFVGGLS 429
A + GG++
Sbjct: 404 ALQQMLIAGGVN 415
>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1150
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/47 (34%), Positives = 28/47 (59%)
Frame = +1
Query: 379 PKKAKARHGKIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKN 519
P++ + +GK L+S ++E+RN FSEF LE E+ F+ ++
Sbjct: 946 PEEIRKLNGKKI---LNSFFDNEELRNEFSEFIQHLESEVSFNSLRS 989
>SPAC1952.05 |gcn5||histone acetyltransferase
Gcn5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 454
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 286 RGFAFIVFKAPESIDKVMAAGEHTINNKK 372
RGFA IVF A S ++V G H +N+ K
Sbjct: 187 RGFAEIVFCAIASNEQVRGYGSHLMNHLK 215
>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 289
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -2
Query: 176 TKSFLSSSRPGASALL*SCESPPPFSAFPLSWLSVVIS 63
T SFL + R +L C S P +AF W+ ++ S
Sbjct: 205 TSSFLETQRSYRIYMLIDCPSNPKATAFARYWMHLICS 242
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 26.2 bits (55), Expect = 3.7
Identities = 15/60 (25%), Positives = 29/60 (48%)
Frame = +1
Query: 409 IFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLLKTP 588
++V L I+ E+R++F FG IL ++ N + + +EQ +N++ P
Sbjct: 178 VYVHQLPENITTQELRSYFLHFGEILYTQV----NNNSGRIVFAQRYFAEQAINEMNNFP 233
>SPAC16.02c |srp2||mRNA export factor Srp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 365
Score = 26.2 bits (55), Expect = 3.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 160 DRKLFVGGLSWETTDKELRDHFGAYGEI 243
+ +LFVG + + T +++ D F YG+I
Sbjct: 3 ETRLFVGRIPPQATREDMMDFFKGYGQI 30
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +1
Query: 406 KIFVGGLSSEISDDEIRNFFSEFGTILEVEMPFDKTKNQRKGFCFITFESEQVVNDLL 579
++FVG + + + +++ +FF +G IL+ ++ GF F+ E + D++
Sbjct: 5 RLFVGRIPPQATREDMMDFFKGYGQILDCKL--------MNGFGFVEVEDARDARDIV 54
>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 25.8 bits (54), Expect = 4.9
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -1
Query: 393 FSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYINTLYFTV 232
F+LL L + GV Y ++ + H+ G P WICL+ +F +
Sbjct: 85 FALLSSQPLCIVGVTGPITVFNYTVYDIMHDRGTPYFPFLCWICLWSMIFHFII 138
>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1649
Score = 25.4 bits (53), Expect = 6.5
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -1
Query: 429 AESSDKNLPMSCFSLLWVYFLVVDGVFTSSHDLVY*LWGLKHNEGKPS*SACVWICLYIN 250
++ L M C +++ F +F S ++V +GLK++ SA V I + N
Sbjct: 1191 SDEETTQLAMDCLAVMAKRFSASPELFISPIEVVSGPYGLKNSARDVQVSAIVCITVLTN 1250
Query: 249 TL 244
TL
Sbjct: 1251 TL 1252
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.313 0.134 0.385
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,589,241
Number of Sequences: 5004
Number of extensions: 53436
Number of successful extensions: 217
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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