Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0887
         (612 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.44 
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    24   1.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   2.4  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   9.5  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   9.5  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.4 bits (53), Expect = 0.44
 Identities = 9/17 (52%), Positives = 15/17 (88%)
 Frame = -2

Query: 350 SPAAMTLSIDSGALNTM 300
           SPA  ++S+DSG++NT+
Sbjct: 555 SPAIESISVDSGSINTV 571



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = +1

Query: 67  ITTDNQLNGNAENGGGDSQDHNSAEA 144
           +T+ + +N N+ NG  +S   +S+ A
Sbjct: 532 LTSSSNVNNNSGNGNTNSSARDSSPA 557


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = +1

Query: 61  QDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDDRK 168
           Q+    N  N NA N   D+Q+ N      ++D+R+
Sbjct: 430 QNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQ 465



 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +1

Query: 76  DNQLNGNAENGGGDSQDHNSAEAPGRDDDRK 168
           DN+ NGN +N  G+ Q+ N      ++D+++
Sbjct: 487 DNKQNGNRQN--GNKQNDNKQNGNRQNDNKR 515



 Score = 23.0 bits (47), Expect = 2.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +1

Query: 76  DNQLNGNAENGGGDSQDHNS 135
           DN+ NGN +N   ++Q+ N+
Sbjct: 512 DNKRNGNRQNDNQNNQNDNN 531



 Score = 22.2 bits (45), Expect = 4.1
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 79  NQLNGNAENGGGDSQDHNSAEAPGRDDDRK 168
           N  N NA+N   D+Q+ N+  A  ++ +++
Sbjct: 426 NAGNQNADNQNADNQNANNQNADNQNANKQ 455



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = +1

Query: 79  NQLNGNAENGGGDSQDHNSAEAPGRDDDR 165
           N+ N N  NG   + + N+     R+D++
Sbjct: 508 NRQNDNKRNGNRQNDNQNNQNDNNRNDNQ 536



 Score = 21.4 bits (43), Expect = 7.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 76  DNQLNGNAENGGGDSQDHNSAE 141
           DNQ N N +N   D+Q H+S++
Sbjct: 522 DNQNNQN-DNNRNDNQVHHSSK 542


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 43  NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAE 141
           NN+N   +   +N  N N  NG G S ++N+ +
Sbjct: 240 NNNNNNNNNNNNNGANDNG-NGNGASNNNNNGD 271



 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = +1

Query: 43  NNDNFAQDITTDNQLNGNAENGGGDSQDHNSAEAPGRDDD 162
           N +  A +   +N  N N  NG  D+ + N A     + D
Sbjct: 232 NANTNASNNNNNNNNNNNNNNGANDNGNGNGASNNNNNGD 271


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +1

Query: 178 GGLSWETTDKELRD 219
           GG+ WE  +KE+ D
Sbjct: 100 GGIFWEGLEKEVGD 113


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 9.5
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 240 FTVCSKMITELLICGLPAQPTNKK 169
           FT+ S + T +++C  PA   N K
Sbjct: 493 FTIASIVGTFIILCEAPALRDNTK 516


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.313    0.134    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,619
Number of Sequences: 438
Number of extensions: 3570
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)