Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0886
         (710 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    24   1.1  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    23   2.5  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   2.5  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    23   2.5  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   9.9  
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   9.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   9.9  

>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -1

Query: 470 NFIEVLNSFGAIHQDVGAGTLGAKAPNLTGFG 375
           N ++ +N+    +Q  G   +G  AP+   FG
Sbjct: 325 NHMQAMNNMAGTYQMTGYSAMGMAAPHHQNFG 356


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 441 SKGVQYLNEIKDSVVAGFQ 497
           SK ++Y+N + D  VAGF+
Sbjct: 183 SKIIEYMNHLVDLGVAGFR 201


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 441 SKGVQYLNEIKDSVVAGFQ 497
           SK ++Y+N + D  VAGF+
Sbjct: 184 SKIIEYMNHLVDLGVAGFR 202


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 441 SKGVQYLNEIKDSVVAGFQ 497
           SK ++Y+N + D  VAGF+
Sbjct: 184 SKIIEYMNHLVDLGVAGFR 202


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 172 TGSDFLIGMQAWSSSRSLRQISRWS 98
           TG +        + S SLR  SRWS
Sbjct: 345 TGGNSASNSSGDAQSTSLRPFSRWS 369


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = +1

Query: 367 TMLPKPVRFGALAPRVPAPT 426
           T  P+P +     PR P PT
Sbjct: 252 TPKPRPTKVSRRKPRPPRPT 271


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 422  GAGTLGAKAPNLTGF 378
            G G+ G+K+P + GF
Sbjct: 1119 GPGSTGSKSPPVAGF 1133


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,377
Number of Sequences: 336
Number of extensions: 4140
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)