BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= brS-0886 (710 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 342 4e-95 SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 342 4e-95 SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce... 204 1e-53 SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 77 2e-15 SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 42 7e-05 SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 34 0.023 SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizo... 30 0.28 SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual 29 0.66 SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|c... 29 0.66 SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 28 1.5 SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 2.0 SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 27 3.5 SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizo... 27 3.5 SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe... 27 3.5 SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 26 4.6 SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 4.6 SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom... 26 4.6 SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|... 26 6.1 SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccha... 25 8.1 SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.1 SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M... 25 8.1 >SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosaccharomyces pombe|chr 3|||Manual Length = 842 Score = 342 bits (840), Expect = 4e-95 Identities = 162/236 (68%), Positives = 185/236 (78%) Frame = +3 Query: 3 LVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSY 182 LVEGLKRL+KSDP V C ESGEHIVAGAGELHLEICLKDL+EDHA IP+K S PVVSY Sbjct: 504 LVEGLKRLSKSDPCVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSY 563 Query: 183 RETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKY 362 RE+V+E S LSKSPNKHNR+FM A+PM + L I+ G VNPRDDFK RAR + +++ Sbjct: 564 RESVSEPSSMTALSKSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEF 623 Query: 363 EYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRG 542 +DVT+ARKIWCFGP+ TG N++VD +K V YLNEIKDSVVA F WA+KEG M EENLR Sbjct: 624 GWDVTDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRS 683 Query: 543 VRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVA 710 RFNI DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ E A Sbjct: 684 CRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENA 739 >SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elongation factor 2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 842 Score = 342 bits (840), Expect = 4e-95 Identities = 162/236 (68%), Positives = 185/236 (78%) Frame = +3 Query: 3 LVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSY 182 LVEGLKRL+KSDP V C ESGEHIVAGAGELHLEICLKDL+EDHA IP+K S PVVSY Sbjct: 504 LVEGLKRLSKSDPCVLCTTSESGEHIVAGAGELHLEICLKDLQEDHAGIPLKISPPVVSY 563 Query: 183 RETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKY 362 RE+V+E S LSKSPNKHNR+FM A+PM + L I+ G VNPRDDFK RAR + +++ Sbjct: 564 RESVSEPSSMTALSKSPNKHNRIFMTAEPMSEELSVAIETGHVNPRDDFKVRARIMADEF 623 Query: 363 EYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLRG 542 +DVT+ARKIWCFGP+ TG N++VD +K V YLNEIKDSVVA F WA+KEG M EENLR Sbjct: 624 GWDVTDARKIWCFGPDTTGANVVVDQTKAVAYLNEIKDSVVAAFAWASKEGPMFEENLRS 683 Query: 543 VRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVA 710 RFNI DV LH DAIHRGGGQIIPT RR +YA L A P + EPV+L EIQ E A Sbjct: 684 CRFNILDVVLHADAIHRGGGQIIPTARRVVYASTLLASPIIQEPVFLVEIQVSENA 739 >SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces pombe|chr 2|||Manual Length = 983 Score = 204 bits (498), Expect = 1e-53 Identities = 98/237 (41%), Positives = 142/237 (59%), Gaps = 4/237 (1%) Frame = +3 Query: 3 LVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSY 182 L++GL++ KS P+ EESGEH + G GE++++ L DL ++ I I+ SDPV + Sbjct: 616 LLDGLRKTNKSYPLSITKVEESGEHTIFGTGEMYMDCLLYDLRTLYSEIEIRVSDPVARF 675 Query: 183 RETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKY 362 ET + S C S +PNK NR+ M +P+ G+ DI+ G+VN K + + + Y Sbjct: 676 CETAVDTSSIKCFSDTPNKKNRITMVVEPLEKGISNDIENGKVNINWPQKRISEFFQKNY 735 Query: 363 EYDVTEARKIWCFGPEGTGPNILVDCSKGV----QYLNEIKDSVVAGFQWAAKEGVMAEE 530 ++D+ +R IW FGP+ G NIL D + LN +K+ + GFQW +EG + +E Sbjct: 736 DWDLLASRSIWAFGPDDRGTNILRDDTLSTDVDKNVLNSVKEYIKQGFQWGTREGPLCDE 795 Query: 531 NLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCP 701 +R V F + DV L + I+RGGGQIIPT RR Y+ LTA PRLMEPVY+ E+ P Sbjct: 796 TIRNVNFRLMDVVLAPEQIYRGGGQIIPTARRVCYSSFLTASPRLMEPVYMVEVHAP 852 >SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Manual Length = 1000 Score = 77.0 bits (181), Expect = 2e-15 Identities = 39/75 (52%), Positives = 48/75 (64%) Frame = +3 Query: 3 LVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSY 182 LV GL L ++DP VQ EE+GEH++ AGE+HLE CLKDL E A I I+ S P+V Y Sbjct: 579 LVTGLDMLNQADPCVQIAVEENGEHVIMCAGEIHLERCLKDLRERFAKIEIQASQPLVPY 638 Query: 183 RETVAEESDQLCLSK 227 RET D L +K Sbjct: 639 RETTIATPDLLAKNK 653 Score = 39.9 bits (89), Expect = 4e-04 Identities = 38/149 (25%), Positives = 66/149 (44%), Gaps = 24/149 (16%) Frame = +3 Query: 321 DDFKTRARYLTEKYEYDVTEARK----IWCFGPEGTGPNILVDCSKGVQYL--------- 461 + F R L E+ D+ E + I FGP+ GPNIL D +K ++ Sbjct: 724 EKFYERLSKLLEEENSDLGELKNHLDSIIAFGPKRVGPNILFDKTKKMRDFRRQSDETKL 783 Query: 462 --NEIKDSVVAGFQWAAKEGVMAEENLRGV-----RFNIYDVTLHTDAIHRGG----GQI 608 +++ + VV FQ +G + E ++G+ +F+I D + + + GQ+ Sbjct: 784 IPSDLSEYVVTAFQLITHQGPLCAEPVQGICVSIDQFDISDDSEDSKLLTINNPQIPGQV 843 Query: 609 IPTTRRCLYACLLTAQPRLMEPVYLCEIQ 695 I + + L PRLM +Y C++Q Sbjct: 844 ISVVKESIRHGFLGWSPRLMLAMYSCDVQ 872 >SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schizosaccharomyces pombe|chr 2|||Manual Length = 770 Score = 42.3 bits (95), Expect = 7e-05 Identities = 20/66 (30%), Positives = 41/66 (62%), Gaps = 1/66 (1%) Frame = +3 Query: 9 EGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYR 185 + L R + DP + ++ ES E I++G GELHLE+ ++ + ++ + + P V++R Sbjct: 492 KALNRFQREDPTFRVQLDNESKETIISGMGELHLEVYVERMRREYK-VDCETGKPRVAFR 550 Query: 186 ETVAEE 203 ET++++ Sbjct: 551 ETLSKK 556 >SPBC660.10 |||translation elongation factor G|Schizosaccharomyces pombe|chr 2|||Manual Length = 813 Score = 33.9 bits (74), Expect = 0.023 Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Frame = +3 Query: 3 LVEGLKRLAKSDPMVQCINE-ESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVS 179 L+E L + + DP + + E+G+ ++ G G +HL++ + L + V Sbjct: 460 LLEALANMNREDPSFRYTQDLENGQLLIQGMGIMHLQVSYERLVSEFGA-RASLGKVQVG 518 Query: 180 YRETVAEESDQLCLSKSPNKHN 245 YRET+ + S + NK N Sbjct: 519 YRETLIDVSFNSVTLSTENKEN 540 >SPAC1F7.12 |yak3|yakC, SPAC21E11.01|aldose reductase YakC|Schizosaccharomyces pombe|chr 1|||Manual Length = 340 Score = 30.3 bits (65), Expect = 0.28 Identities = 14/53 (26%), Positives = 25/53 (47%) Frame = +3 Query: 117 LKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMP 275 +K LEE+ + +K SD V + ++ + P +++FM PMP Sbjct: 287 VKYLEENFGALKVKLSDATVKEIREACDNAEVIGARYPPGAGSKIFMDTPPMP 339 >SPBC947.04 |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Manual Length = 973 Score = 29.1 bits (62), Expect = 0.66 Identities = 19/56 (33%), Positives = 27/56 (48%) Frame = -2 Query: 202 SSATVSRYDTTGSDFLIGMQAWSSSRSLRQISRWSSPAPATMCSPDSSLIHCTMGS 35 S T YDTTG+D ++ SS R WS+ P +P ++ I+ T GS Sbjct: 117 SDYTSVYYDTTGTDDVVYEYHPSSERHKSTNDTWSTNLPT---NPTTTAIYSTSGS 169 >SPAC24H6.13 |||DUF221 family protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 871 Score = 29.1 bits (62), Expect = 0.66 Identities = 22/76 (28%), Positives = 37/76 (48%) Frame = +3 Query: 57 NEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPN 236 +EE+ + A E C++DL++ + K+SD Y T+ ++KS Sbjct: 198 DEETLHELFPNASEF---TCVRDLKKLEKKVK-KRSDLGNKYESTLNS-----LINKSVK 248 Query: 237 KHNRLFMKAQPMPDGL 284 KHN+L K +P+P L Sbjct: 249 KHNKLVKKHKPLPSTL 264 >SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosaccharomyces pombe|chr 1|||Manual Length = 815 Score = 27.9 bits (59), Expect = 1.5 Identities = 25/135 (18%), Positives = 55/135 (40%), Gaps = 3/135 (2%) Frame = +3 Query: 36 DPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQL 215 D ++ I E+ ++ + L E ++ + E I + + + +++ D Sbjct: 413 DVDLEQIAAETHGYVGSDLASLCSEAAMQQIREKMDMIDLDEDEIDAEVLDSLGVTMDNF 472 Query: 216 CLSKSPNKHNRLFMKAQPMPDGLPEDI---DEGRVNPRDDFKTRARYLTEKYEYDVTEAR 386 + + + L +P+ EDI +E + R+ + Y + + VT ++ Sbjct: 473 RFALGSSNPSALRETVVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSK 532 Query: 387 KIWCFGPEGTGPNIL 431 + FGP GTG +L Sbjct: 533 GVLFFGPPGTGKTLL 547 >SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces pombe|chr 1|||Manual Length = 1323 Score = 27.5 bits (58), Expect = 2.0 Identities = 14/44 (31%), Positives = 24/44 (54%) Frame = +3 Query: 108 EICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNK 239 E+C +LE+D I +S +S + A++ DQL S + +K Sbjct: 64 ELCNFELEKDSLESMIHESSTALSAQSNTAQDGDQLASSSTISK 107 >SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces pombe|chr 1|||Manual Length = 670 Score = 26.6 bits (56), Expect = 3.5 Identities = 24/92 (26%), Positives = 39/92 (42%), Gaps = 2/92 (2%) Frame = +3 Query: 102 HLEICLKDLEEDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDG 281 HL++CL D +E+ + K + E S +L LSK + + + M Sbjct: 475 HLKLCLSDSQEELLQLNAKLEKANIVIDEL---NSAKLKLSKQVEEESSMKDDLTEMNQR 531 Query: 282 LPEDID--EGRVNPRDDFKTRARYLTEKYEYD 371 L E I+ E VN +T + T K +Y+ Sbjct: 532 LKEQIESYENEVNSEITSRTLKEFETLKTQYE 563 >SPAC1006.08 |etd1||ethanol-hypersensitive mutant protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 391 Score = 26.6 bits (56), Expect = 3.5 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 1/49 (2%) Frame = -1 Query: 674 RLHETGL-SS*QTCVQASSSCWNDLATTSMDGISMECYIIDVESNTTQI 531 ++ ET L ++ Q + CW++L+TTS + + II + TT I Sbjct: 191 QIQETSLGATTQEDESSDGICWDELSTTSPESSKVSEPIIQDNTQTTHI 239 >SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe|chr 2|||Manual Length = 230 Score = 26.6 bits (56), Expect = 3.5 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = -1 Query: 410 LGAKAPNLTGFGNIVFVLFCKIPSAS 333 +G PNL GN +F L ++PS+S Sbjct: 169 IGILPPNLNSIGNKMFSLKSRVPSSS 194 >SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-lysine forming] |Schizosaccharomyces pombe|chr 1|||Manual Length = 368 Score = 26.2 bits (55), Expect = 4.6 Identities = 14/40 (35%), Positives = 22/40 (55%) Frame = -2 Query: 619 VVGMIWPPPLWMASVWSVTS*MLNLTPRKFSSAITPSLAA 500 V G+ PPPL + S+ + + + + FS A+ PSL A Sbjct: 305 VKGVTTPPPLEVISIDHLPTLLPRESSEAFSEALIPSLLA 344 >SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schizosaccharomyces pombe|chr 2|||Manual Length = 1253 Score = 26.2 bits (55), Expect = 4.6 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = +3 Query: 282 LPEDIDEGRVNPRDDFKT 335 LPE IDEG+++ DD KT Sbjct: 194 LPEKIDEGKLSDVDDGKT 211 >SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pombe|chr 1|||Manual Length = 166 Score = 26.2 bits (55), Expect = 4.6 Identities = 13/47 (27%), Positives = 23/47 (48%) Frame = -2 Query: 595 PLWMASVWSVTS*MLNLTPRKFSSAITPSLAAHWNPATTESLISLRY 455 P W+A V ++ S + P FSS + +L A+ N + + + Y Sbjct: 43 PFWLAEVLAINSFVSIHMPAPFSSVVRNALKANPNSVSIRDITTHYY 89 >SPBP23A10.13 |orc4|orp4|origin recognition complex subunit Orc4|Schizosaccharomyces pombe|chr 2|||Manual Length = 972 Score = 25.8 bits (54), Expect = 6.1 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%) Frame = +3 Query: 378 EARKIWCFGPEGTGPNILVD--CSKGVQYLNE 467 E + GP G+G ++LVD S+ Q +NE Sbjct: 574 EGNSVIIVGPRGSGKSVLVDDILSRAAQEINE 605 >SPAC23E2.03c |ste7||meiotic suppressor protein Ste7|Schizosaccharomyces pombe|chr 1|||Manual Length = 569 Score = 25.4 bits (53), Expect = 8.1 Identities = 10/33 (30%), Positives = 22/33 (66%), Gaps = 2/33 (6%) Frame = -2 Query: 100 SSPAPATMCSPDSSL--IHCTMGSDLARRLRPS 8 S+ +P+T+CSPD+++ ++ G L ++ P+ Sbjct: 403 SNVSPSTICSPDNNVTFVNLAPGEKLTFKIEPN 435 >SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 328 Score = 25.4 bits (53), Expect = 8.1 Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 7/83 (8%) Frame = -1 Query: 695 LNFTKIYRLHETGLSS*QTCVQASSSCWND-----LAT--TSMDGISMECYIIDVESNTT 537 L+++K++ LH +Q S S +ND LA ++ + + Y++ E + Sbjct: 192 LSYSKVFFLH---------LLQHSDSSFNDKFLLLLANIPVTVSNVEVLLYLLQQEESLA 242 Query: 536 QILFSHNSFLSGPLESSHNRVLN 468 Q + SFL L S HN+V N Sbjct: 243 QFDLNGKSFLYHMLVSLHNQVTN 265 >SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||Manual Length = 1317 Score = 25.4 bits (53), Expect = 8.1 Identities = 11/31 (35%), Positives = 18/31 (58%) Frame = +3 Query: 456 YLNEIKDSVVAGFQWAAKEGVMAEENLRGVR 548 YL+ + +AGFQ G+ ++N +GVR Sbjct: 248 YLSPVVRRYLAGFQSGFLHGLKTKDNSKGVR 278 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 3,140,448 Number of Sequences: 5004 Number of extensions: 69252 Number of successful extensions: 246 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 238 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 244 length of database: 2,362,478 effective HSP length: 71 effective length of database: 2,007,194 effective search space used: 331187010 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -