Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0886
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                   406   e-113
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)             225   2e-59
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)                 54   1e-07
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.23 
SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)               32   0.53 
SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.70 
SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)                     29   2.8  
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)                29   2.8  
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)                    29   3.7  
SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)                   29   4.9  
SB_7387| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.9  
SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_26912| Best HMM Match : C2 (HMM E-Value=1.4e-17)                    28   8.6  
SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_28265| Best HMM Match : Ank (HMM E-Value=6.3e-20)                   28   8.6  
SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)                 28   8.6  

>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score =  406 bits (999), Expect = e-113
 Identities = 187/237 (78%), Positives = 208/237 (87%), Gaps = 1/237 (0%)
 Frame = +3

Query: 3    LVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSY 182
            LVEGL RLAKSDPMVQ   EESGEHIVAGAGELHLEICLKDLEEDHACIP+KKS+PVVSY
Sbjct: 494  LVEGLNRLAKSDPMVQSFTEESGEHIVAGAGELHLEICLKDLEEDHACIPLKKSEPVVSY 553

Query: 183  RETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEG-RVNPRDDFKTRARYLTEK 359
            RE V+++S+Q+CLSKSPNKHNRLFM A P+ + LPEDID+G  +NPR DFK RARYL + 
Sbjct: 554  RECVSDKSNQMCLSKSPNKHNRLFMTAGPLEEKLPEDIDDGCEINPRQDFKIRARYLADT 613

Query: 360  YEYDVTEARKIWCFGPEGTGPNILVDCSKGVQYLNEIKDSVVAGFQWAAKEGVMAEENLR 539
            Y +DV EARKIW FGPEGTGPN+LVD SKGVQYLNEIKDSVVAGFQWA KEG + +EN+R
Sbjct: 614  YGWDVNEARKIWSFGPEGTGPNLLVDVSKGVQYLNEIKDSVVAGFQWATKEGPLCDENVR 673

Query: 540  GVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVA 710
            GVRFNI+DVTLH DAIHRGGGQIIPT RR LYAC+LTA+P L+EPVY  EIQCPE A
Sbjct: 674  GVRFNIHDVTLHADAIHRGGGQIIPTARRVLYACMLTAKPCLLEPVYSVEIQCPESA 730


>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score =  225 bits (551), Expect = 2e-59
 Identities = 106/237 (44%), Positives = 152/237 (64%), Gaps = 4/237 (1%)
 Frame = +3

Query: 3    LVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSY 182
            +++GL+++ KS P++    EESGEH++ G GEL+L+  + DL   ++ I IK +DPV+++
Sbjct: 471  MLDGLRKVNKSYPLLTTKVEESGEHVILGTGELYLDCIMHDLRRMYSEIDIKVADPVIAF 530

Query: 183  RETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRVNPRDDFKTRARYLTEKY 362
             ETV E S   C +++PNK N++ M A+P+  GL EDI+  +V    + K    +   KY
Sbjct: 531  CETVVETSSLKCFAETPNKKNKVTMIAEPLEKGLAEDIENEKVLISWNKKKLGEFFQTKY 590

Query: 363  EYDVTEARKIWCFGPEGTGPNILVD----CSKGVQYLNEIKDSVVAGFQWAAKEGVMAEE 530
            ++D+  AR IW FGPE TGPNILVD           LN +KDS++ GFQWA +EG + +E
Sbjct: 591  DWDLLAARSIWAFGPENTGPNILVDDTLPSEVDKSLLNTVKDSIIQGFQWATREGPLCDE 650

Query: 531  NLRGVRFNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCP 701
             +R V+F I D  +  + IHRGGGQIIPT RR  Y+  L A PRLMEP +  E+Q P
Sbjct: 651  PIRNVKFKILDAVIAGEPIHRGGGQIIPTARRVAYSAFLMATPRLMEPYFFVEVQAP 707


>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
          Length = 549

 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 19/41 (46%), Positives = 31/41 (75%)
 Frame = +3

Query: 72  EHIVAGAGELHLEICLKDLEEDHACIPIKKSDPVVSYRETV 194
           EH++  AGE+HL+ C+ DL+  +AC+ +  SDP++ +RETV
Sbjct: 2   EHVIIAAGEVHLQRCVDDLKRRYACVELNVSDPIIPFRETV 42



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 30/83 (36%), Positives = 39/83 (46%), Gaps = 17/83 (20%)
 Frame = +3

Query: 381 ARKIWCFGPEGTGPNILVDCSKGV------QYLNE-----------IKDSVVAGFQWAAK 509
           A  IW FGP GTGPNIL++           Q L+E              S+V+GFQ    
Sbjct: 179 ADHIWAFGPRGTGPNILLNRDPDYPRPSIWQCLDENAGYKAGEYKPYDSSIVSGFQMTTL 238

Query: 510 EGVMAEENLRGVRFNIYDVTLHT 578
            G +  E L GV F+I  + L+T
Sbjct: 239 SGPLCAEPLMGVCFSIEHLVLNT 261


>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1176

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +3

Query: 153 IKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLP--EDIDEGRVNPRDD 326
           I+K+     Y+E + +E++ L   +  N+H+ +   AQ  P GL     I+E + N R  
Sbjct: 216 IEKAQKAFEYKENIEKEAEALRKQQLENRHSLISSNAQYHPQGLETYPSINEYKKNSRMV 275

Query: 327 FK 332
           FK
Sbjct: 276 FK 277


>SB_3585| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1117

 Score = 31.9 bits (69), Expect = 0.53
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 549 FNIYDVTLHTDAIHRGGGQIIPTTRRCLYACLLTAQPRLMEPVYL 683
           FN   V L    + R   +I+PT RR  +  LLT+     +PVY+
Sbjct: 526 FNKLGVFLGLAEVRRSLQEIVPTQRRKAFVALLTSTVNAKQPVYI 570


>SB_1790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = +3

Query: 9   EGLKRLAKSDPMVQC-INEESGEHIVAGAGELHLEI 113
           + + R  + DP  +   ++ES E I++G GELHL++
Sbjct: 42  KAINRFTREDPTFRVRFDDESKETIISGMGELHLDV 77


>SB_30569| Best HMM Match : 3-alpha (HMM E-Value=6)
          Length = 160

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +3

Query: 39  PMVQCINEESGEHIVAGAGELHLEICLKDLEE 134
           P  Q + E   EH+VA +G+L  E C K L +
Sbjct: 26  PTWQRVKEFQNEHLVAQSGKLRFEACKKTLSK 57


>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
          Length = 1021

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/69 (27%), Positives = 28/69 (40%)
 Frame = +3

Query: 132 EDHACIPIKKSDPVVSYRETVAEESDQLCLSKSPNKHNRLFMKAQPMPDGLPEDIDEGRV 311
           +DH C  +     + +    V  E D+ CL + P +     M         P+  D GR 
Sbjct: 33  KDHTCAAL-----LYTKMTAVNLEGDEPCLMEKPREPRNNDMNTTHYGGKTPDPRDGGRD 87

Query: 312 NPRDDFKTR 338
            PRDD K +
Sbjct: 88  GPRDDEKQK 96


>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
          Length = 809

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = +3

Query: 180 YRETVAEESDQLCLSKSPNKHN--RLFMKAQPMPDGLPEDIDEGRVNPRD 323
           Y+         + L K  N H+   LF K + +P  L ED++EG V   D
Sbjct: 230 YKSISTRRELYMLLLKRLNLHHLMSLFCKTKKLPVALSEDLEEGEVTEED 279


>SB_26947| Best HMM Match : LIM (HMM E-Value=6.2e-32)
          Length = 648

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 231 PNKHNRLFMKAQPMPDGLPEDIDEGRVNPRD 323
           PN  N  F+KA P+ DG   D + G +  RD
Sbjct: 413 PNTGNTEFVKAIPIEDGESHDSNYGTIESRD 443


>SB_7387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 96

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 3/41 (7%)
 Frame = +3

Query: 27  AKSDPMVQ---CINEESGEHIVAGAGELHLEICLKDLEEDH 140
           AK DP +    C NE+SGEH  +  GE +L I ++ +++D+
Sbjct: 7   AKIDPNLGTRICFNEDSGEH-YSCHGEENLAISMEGMDKDY 46


>SB_24848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1506

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +1

Query: 316  PAMTSRLALGILQKSTNTMLPKPVRFGALAPRVPA 420
            PA     + GI++ ST  ++P P+R   + P VPA
Sbjct: 1109 PAKFVFTSTGIVRASTRKVVPSPLRRSKVPPTVPA 1143


>SB_26912| Best HMM Match : C2 (HMM E-Value=1.4e-17)
          Length = 232

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 174 VSYRETVAEESDQLCLS-KSPNKHN--RLFMKAQPMPDGLPEDIDEGRVNPRD 323
           V +R  +   +D   L+ +  N H+   LF K + +P  L ED++EG V   D
Sbjct: 29  VKFRYVILNINDFAFLNNRRLNLHHLMSLFCKTKKLPVALSEDLEEGEVTEED 81


>SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 76

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 652 AVSRHAYKHLLVVGMIWPPPLWMA 581
           A+ +H   HL  +  +WP   WMA
Sbjct: 13  ALRKHQCSHLFTIKRVWPVTRWMA 36


>SB_28265| Best HMM Match : Ank (HMM E-Value=6.3e-20)
          Length = 165

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = +3

Query: 3   LVEGLKRLAKSDPMVQCINEESGEHIVAGAGELHLEICLK 122
           +V+ L   A  DP  + +N  S  H  A  G+LH   CLK
Sbjct: 120 VVKWLVEKANCDPGAKTLNRMSAIHFAASGGDLH---CLK 156


>SB_19996| Best HMM Match : PKD_channel (HMM E-Value=0)
          Length = 746

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/22 (54%), Positives = 17/22 (77%), Gaps = 4/22 (18%)
 Frame = +3

Query: 267 PMPDGLPEDIDEGR----VNPR 320
           P+PDG+ E+IDEG+    +NPR
Sbjct: 721 PVPDGIYEEIDEGQIYDIINPR 742


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,180,516
Number of Sequences: 59808
Number of extensions: 566208
Number of successful extensions: 1526
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1516
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)