Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0884
         (755 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    23   2.0  
AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH trans...    23   2.0  

>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 19/87 (21%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
 Frame = +3

Query: 318 GTSAVAIDNKIEQAMDLVKSHLMFAVREEVEV-LKERIAELMERITQLEVENTYLRAHAS 494
           GT+A+  +   E     V+ H +  + +E+ + + ++++  +  +  + ++    RA  +
Sbjct: 106 GTTALTFEEDPEP-FGGVRDHNLTTLCQELGISVVQKVSHTLYHLQDI-IDRNGGRAPLT 163

Query: 495 QDTLAQLPAAQGNKPAAQPQPPVS*NS 575
                 + A  G  P  QP+PPV+ NS
Sbjct: 164 YHQFLAIIACMG--PPPQPEPPVTFNS 188


>AJ829922-1|CAH25640.1|  193|Tribolium castaneum twist bHLH
           transcription factor protein.
          Length = 193

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 13/49 (26%), Positives = 21/49 (42%)
 Frame = +3

Query: 351 EQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRAHASQ 497
           E+  D V  ++     EE  VLK R      +    + EN++   H S+
Sbjct: 36  EERPDFVAPYIKVEADEEAPVLKSRSFGRKRKSISSDEENSFQGKHKSR 84


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,533
Number of Sequences: 336
Number of extensions: 3154
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)