Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0884
         (755 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    26   6.7  
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    26   6.7  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   8.8  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    25   8.8  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1727

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 16/47 (34%), Positives = 27/47 (57%)
 Frame = +3

Query: 345  KIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRA 485
            ++ Q +  +KS L   V+ + E L+   A+   +I QLE++NT L A
Sbjct: 1335 ELNQEIGHLKSELE-TVKSKSEDLENERAQNQSKIEQLELKNTKLAA 1380


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 20/79 (25%), Positives = 34/79 (43%)
 Frame = +3

Query: 231 LTTESQPKPAPTEPPRSPFARRNTWCSASGTSAVAIDNKIEQAMDLVKSHLMFAVREEVE 410
           L TE +PK A  E   + F   +  CS      V +   + +    V+   M  +   +E
Sbjct: 603 LFTEKKPKNASKEIAVTSFLSSHAACSKLSNVRVLLLEILTRVHGKVEDAKMQILLPRLE 662

Query: 411 VLKERIAELMERITQLEVE 467
            L E  +E  + +++ EVE
Sbjct: 663 QLSEFNSEKFKTVSKREVE 681


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 20/65 (30%), Positives = 35/65 (53%), Gaps = 5/65 (7%)
 Frame = +3

Query: 354 QAMDLVKSHLMFAVREEVEVLKERIAELMERI----TQLEV-ENTYLRAHASQDTLAQLP 518
           ++ ++ K  L   VR+E+  +KE+I  L ERI    T++ V EN   +    +DTL  L 
Sbjct: 35  ESREIEKKRLQ-KVRKEISSVKEKIRRLDERIDSRLTKISVKENFRKQLSKFRDTLQSLQ 93

Query: 519 AAQGN 533
           + + +
Sbjct: 94  SDEND 98


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2104

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = +3

Query: 339  DNKIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRA 485
            D + EQA+   K  L+      VEV+ ER++ L  ++T  + +  +L A
Sbjct: 875  DLQEEQALAHEKDILVERANSRVEVVHERLSSLENQVTIADEKYEFLYA 923


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,735,335
Number of Sequences: 5004
Number of extensions: 48102
Number of successful extensions: 173
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)