Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0884
(755 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0327 + 16817149-16817438,16818029-16818224,16818309-168196... 33 0.32
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 32 0.57
11_04_0025 + 12382485-12382823,12382835-12382894,12382960-123830... 31 0.99
05_01_0234 - 1743784-1744017,1748103-1749068 31 0.99
02_01_0628 + 4717963-4718175,4718719-4718857,4719514-4719740,471... 30 2.3
06_03_0729 + 23927656-23927661,23927774-23927923,23928316-239285... 29 3.0
02_02_0138 + 7114949-7115656,7116388-7116435,7116830-7117988,711... 29 3.0
01_05_0135 + 18460416-18460482,18460614-18460942 29 3.0
05_04_0351 + 20521164-20522132,20522604-20522706,20522890-20523440 29 4.0
03_02_0663 + 10256898-10258915,10259162-10259248,10259463-102597... 29 4.0
12_02_0263 - 16551831-16551909,16552668-16553173 29 5.3
05_04_0172 + 18718661-18718930,18719410-18720252,18720326-187203... 29 5.3
04_04_1529 + 34176547-34177215,34177280-34177320,34178777-34179053 29 5.3
11_04_0367 - 16840732-16843428,16844425-16844760 28 7.0
04_04_0891 + 29130494-29130904,29131043-29131102,29131203-291314... 28 7.0
09_04_0002 - 13567257-13567373,13568049-13568243,13569750-135698... 28 9.2
06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797 28 9.2
03_06_0207 - 32356951-32357058,32357187-32357256,32357363-323575... 28 9.2
>07_03_0327 +
16817149-16817438,16818029-16818224,16818309-16819642,
16819925-16820097,16820257-16820503,16820599-16820893,
16820934-16820982,16821357-16821562
Length = 929
Score = 32.7 bits (71), Expect = 0.32
Identities = 18/77 (23%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Frame = +3
Query: 336 IDNKIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRAHASQDTLAQL 515
I +K++ A ++++ VR + + + E + T+ Y + QD LAQ
Sbjct: 223 IPSKLDAARSGTSANIIVVVRTDYSISASDLGEHLFNWTRTSFTANYYARYGHQDMLAQS 282
Query: 516 PAAQGNKPAAQPQ-PPV 563
+GN P + + PP+
Sbjct: 283 SCLRGNIPCIRTEGPPI 299
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 31.9 bits (69), Expect = 0.57
Identities = 26/91 (28%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Frame = +3
Query: 219 FKLNLTTESQPK--PAPTEPPRSPFARRNTWCSASGTSAVAIDNKIEQAMDLVKSHLMFA 392
F+L+LT + P P PPR+ A T + + +++V + A + + M
Sbjct: 51 FRLSLTLSRSRRHSPPPPPPPRAAAAAAPTTSAGAASTSVFVRRATASAAAVTVTVAM-- 108
Query: 393 VREEVEVLKER-IAELMERITQLEVENTYLR 482
R +V+VL+ R AEL ++ L+ E + LR
Sbjct: 109 ARIKVDVLRGRNKAELQAQLKDLKAELSVLR 139
>11_04_0025 +
12382485-12382823,12382835-12382894,12382960-12383073,
12383187-12383837
Length = 387
Score = 31.1 bits (67), Expect = 0.99
Identities = 23/88 (26%), Positives = 41/88 (46%)
Frame = +3
Query: 243 SQPKPAPTEPPRSPFARRNTWCSASGTSAVAIDNKIEQAMDLVKSHLMFAVREEVEVLKE 422
S+P P PP SP + ++ + S + I+ + + A + + F E E
Sbjct: 128 SKPAPPHPPPPSSPVQQMSSDRTPSAAGSHNIEEEEQPAAPAIPDY--FDKEAEEETTST 185
Query: 423 RIAELMERITQLEVENTYLRAHASQDTL 506
+A L E + + +E+ YLR +S D+L
Sbjct: 186 ALAPLDETVKK-TLEDIYLRLGSSLDSL 212
>05_01_0234 - 1743784-1744017,1748103-1749068
Length = 399
Score = 31.1 bits (67), Expect = 0.99
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Frame = -1
Query: 380 VALNQIHSLLDLVVDGHRAGA*CGAPRVPPSE-RRPWWFGWSRFRLRFC 237
+A ++H LL LV H A P+ PP E + W + W +L C
Sbjct: 122 IAEEEVHHLLHLVHIAHLAKVDSAGPKSPPCEWQLCWQWPWHALQLLLC 170
>02_01_0628 +
4717963-4718175,4718719-4718857,4719514-4719740,
4719825-4719998,4720090-4720176
Length = 279
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 399 EEVEVLKERIAELMERITQLEVENTYLRAHASQ 497
+EV LK+ + + E+I LE+ N LR H Q
Sbjct: 231 QEVHSLKQLVLQYQEQIKTLEINNYALRVHLKQ 263
>06_03_0729 +
23927656-23927661,23927774-23927923,23928316-23928567,
23929072-23929209,23931213-23932730
Length = 687
Score = 29.5 bits (63), Expect = 3.0
Identities = 14/26 (53%), Positives = 16/26 (61%)
Frame = +3
Query: 243 SQPKPAPTEPPRSPFARRNTWCSASG 320
S P P+P PP SP A R CS+SG
Sbjct: 209 SPPPPSPPPPPPSPAAHRR--CSSSG 232
>02_02_0138 +
7114949-7115656,7116388-7116435,7116830-7117988,
7118336-7118424,7118697-7118732
Length = 679
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 213 AGFKLNLTTESQPKPAPTEPPRSPFARRNTWCSAS 317
AG L +T P P P +P P RR+ C+A+
Sbjct: 21 AGPSLTVTVAPTPPPTPLDPRGYPLPRRHLVCAAA 55
>01_05_0135 + 18460416-18460482,18460614-18460942
Length = 131
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/31 (38%), Positives = 18/31 (58%)
Frame = +1
Query: 94 RWPLRRRT*GHAHMPPRHRNQCTMLTLHREL 186
R P RT H +PP HRN+C + + +E+
Sbjct: 70 RTPTAPRTLLHLPLPPSHRNRCAITRICQEI 100
>05_04_0351 + 20521164-20522132,20522604-20522706,20522890-20523440
Length = 540
Score = 29.1 bits (62), Expect = 4.0
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = -3
Query: 171 GQHCALIPVAWWHVSMSSCAPAQWPSEVACW 79
G HC L+ V M S +W S++ CW
Sbjct: 194 GYHCDLLTRGMGGVEMESRKAEEWASQLQCW 224
>03_02_0663 +
10256898-10258915,10259162-10259248,10259463-10259724,
10259802-10260111,10260535-10260645,10260861-10261090
Length = 1005
Score = 29.1 bits (62), Expect = 4.0
Identities = 27/73 (36%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
Frame = +3
Query: 246 QPKPAPTEPPRSPFARRNTWCSASGTSAVAIDNKIEQAMDLVKSHLMFAVREEVEVLKER 425
+P P P PP S F RRNT +ID +E D+ + L F + EE EV ER
Sbjct: 215 RPPPPPPTPPSSRF-RRNT---------SSIDQMVEDDGDVETNDLWFVIGEE-EVACER 263
Query: 426 --IAELMERITQL 458
IA L + + L
Sbjct: 264 SCIAALSKPLNTL 276
>12_02_0263 - 16551831-16551909,16552668-16553173
Length = 194
Score = 28.7 bits (61), Expect = 5.3
Identities = 18/80 (22%), Positives = 29/80 (36%)
Frame = +3
Query: 45 ATCEALGRRNVANKLLQMATAQAHMRTCSHATTPPESMHNADXXXXXXXXXXXXXIAGFK 224
A A + + ++ M AQA ++ HA TP + A + +
Sbjct: 20 AAAAAAQHQQLQRQIFLMQQAQAQSQSQGHAPTPQQLSQQAMSRFPSNIDAHLRPLGPIR 79
Query: 225 LNLTTESQPKPAPTEPPRSP 284
QP+P P +PP P
Sbjct: 80 FQ--QPPQPQPQPPQPPPQP 97
>05_04_0172 +
18718661-18718930,18719410-18720252,18720326-18720354,
18720439-18720529,18720625-18720779,18721552-18721662,
18722579-18722645
Length = 521
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +3
Query: 234 TTESQPKPAPTEPPRSPFARRNTWCSASGTSAVAIDNKIEQAMDLVKSH 380
++ S P P P PPR PF + S S +D E A + KSH
Sbjct: 73 SSASSPPPPP-RPPRRPFESSKGEENGSLPSIAQMDKSEEDAPTIPKSH 120
>04_04_1529 + 34176547-34177215,34177280-34177320,34178777-34179053
Length = 328
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = -1
Query: 413 YLDFFAHREHQVALNQIHSLLDLVVDGHRAGA*CGA--PRVPPSERR 279
Y F+A + + IH ++D V +G G GA PR PP RR
Sbjct: 83 YKSFWARWDASPNRHVIHRIIDAVEEGSGGGGGGGAGPPRRPPRRRR 129
>11_04_0367 - 16840732-16843428,16844425-16844760
Length = 1010
Score = 28.3 bits (60), Expect = 7.0
Identities = 11/19 (57%), Positives = 13/19 (68%)
Frame = +1
Query: 37 DGVRRVKPSADVMLPTSYF 93
DGVRR P + + PTSYF
Sbjct: 157 DGVRRTAPGIECVRPTSYF 175
>04_04_0891 +
29130494-29130904,29131043-29131102,29131203-29131409,
29131520-29131645,29131767-29131823,29131946-29132014
Length = 309
Score = 28.3 bits (60), Expect = 7.0
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Frame = +3
Query: 237 TESQPKPAPTEPPRSPFARRNTWCSASGTSAVAIDNKIEQAMDLVKSHLMFAVREEVEVL 416
TESQ PAP+ PP P + A+ +A I + + + +++L+ AV +
Sbjct: 62 TESQQAPAPSPPPTVPVPVPSLEEEAAAAAARRIAERKARKLSERRTYLVAAVMSSLGFT 121
Query: 417 KERIAELMERI-TQLE 461
+A + R QLE
Sbjct: 122 SMAVAAVYYRFHWQLE 137
>09_04_0002 -
13567257-13567373,13568049-13568243,13569750-13569869,
13569958-13570028,13570066-13570126,13570170-13570202,
13570303-13570431,13571958-13572042,13572143-13572252,
13572534-13572606,13572688-13572810,13573111-13573289,
13573659-13573736,13573813-13573871,13574122-13574212,
13574265-13574442,13574553-13575088
Length = 745
Score = 27.9 bits (59), Expect = 9.2
Identities = 16/74 (21%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Frame = +3
Query: 234 TTESQPKPAPTEPPRSPFARRNTWCSASGTSAVAIDNKIE--QAMDLV-KSHLMFAVREE 404
T + P P P+ PP + R S S +++ A+D + +++D + ++ ++ +
Sbjct: 33 TAAAAPDPDPSAPPAAAAVRHWLHASVSSSASTALDRFSDGYRSLDRPGRREILRSLAAD 92
Query: 405 VEVLKERIAELMER 446
+V + R+ +LM +
Sbjct: 93 YDVPRARVRDLMRQ 106
>06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797
Length = 216
Score = 27.9 bits (59), Expect = 9.2
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = +3
Query: 249 PKPAPTEPPRSPFARRNTWCSASGTSAVAI 338
P PA T PP WC A+ T A A+
Sbjct: 111 PPPATTTPPAPGAREAGVWCVANPTVASAV 140
>03_06_0207 -
32356951-32357058,32357187-32357256,32357363-32357553,
32358011-32358106,32359014-32359120,32359470-32359512,
32359806-32359895,32360025-32360096,32362390-32362605
Length = 330
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 258 APTEPPRSPFARRNTWCSASGTSAVAIDNKIEQAMDLV 371
AP+ PP SP A ++ +A+ A D K+ A LV
Sbjct: 17 APSPPPPSPGASSSSSAAAAAAPGAAKDRKMASAEQLV 54
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,818,857
Number of Sequences: 37544
Number of extensions: 448578
Number of successful extensions: 2043
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2035
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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