Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0884
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28)               28   7.1  
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  
SB_45235| Best HMM Match : CBM_20 (HMM E-Value=0.91)                   28   9.4  
SB_38304| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.39)               28   9.4  
SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)        28   9.4  
SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069)                28   9.4  
SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)    28   9.4  

>SB_44859| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 650

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +3

Query: 234 TTESQPKPAPTEPPRSPFARRNTWCSASGTSAVAIDNK--IEQAMDLVKSHLMFAVREEV 407
           T  S P   P+ PP +PF   +T   +S T+ ++ D+   I +   L+  H +  +R  +
Sbjct: 546 TPSSYPPTQPSYPPTAPFLSADTTLLSSDTTLLSPDSTLLILRRNLLILRHNLLILRHNL 605

Query: 408 EVLKERIAELMERI 449
            +L+  +  L   +
Sbjct: 606 IILRRNLLILRHNL 619


>SB_18663| Best HMM Match : zf-C2H2 (HMM E-Value=4.5e-28)
          Length = 693

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 30  EDGRCATCEALGRRNVANKLLQMATAQAHMRTCSHATTPPE 152
           +D R  TCE  G+R ++ + ++    +   RT   AT PP+
Sbjct: 327 KDERGQTCELCGKRLLSRRGIKEHKQRCVKRTVDRATAPPK 367


>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4856

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 234  TTESQPKPAPTEPPRSPFARRNTWCSASGTSAVAIDNKIEQ 356
            +T S  KP    PP  P  R  +W S    S  +ID  +++
Sbjct: 4685 STGSNAKPKKVPPPTPPKKRSGSWKSRDSDSDSSIDAVLDE 4725


>SB_45235| Best HMM Match : CBM_20 (HMM E-Value=0.91)
          Length = 817

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 288 ARRNTWCSASGTSAVAIDNKIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVE 467
           ARR +W S   T  +  +N  E+    +   +  A  E VE + ER A++ +  T+L   
Sbjct: 665 ARRLSWLSEEETLKLFCNNLTEETDPAIIEAVTKAAFEAVERIIERGADVSKSFTELHRT 724

Query: 468 NT 473
           +T
Sbjct: 725 ST 726


>SB_38304| Best HMM Match : TPR_MLP1_2 (HMM E-Value=0.39)
          Length = 704

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +3

Query: 408 EVLKERIAELMERITQLEVENTYLRAHASQDTLAQLPAAQGNKPAAQPQPP 560
           E L +++AEL+  +++ +VEN  LR+   Q    ++ + +G +     QPP
Sbjct: 72  EQLGKQLAELLNHLSKFKVENERLRSELDQ----KIKSIEGLEERLSCQPP 118


>SB_36542| Best HMM Match : Pox_A_type_inc (HMM E-Value=7.3e-11)
          Length = 1500

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 15/51 (29%), Positives = 29/51 (56%)
 Frame = +3

Query: 408  EVLKERIAELMERITQLEVENTYLRAHASQDTLAQLPAAQGNKPAAQPQPP 560
            E L +++AEL+  +++ +VEN  LR+   Q    ++ + +G +     QPP
Sbjct: 1292 EQLGKQLAELLNHLSKFKVENERLRSELDQ----KIKSIEGLEERLSCQPP 1338


>SB_35536| Best HMM Match : zf-C2H2 (HMM E-Value=0.0069)
          Length = 657

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 390 AVREEVEVLKERIAELMERITQLEVENTYLRA---HASQDTLAQLPAAQGN 533
           A RE  E     +  L ER+  L+ EN  LRA   + +Q+ +A++    G+
Sbjct: 477 AEREAREAKNTELLSLRERVDHLQFENQELRAELDNVNQEQMAEMQRRHGS 527


>SB_20481| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.60519e-45)
          Length = 4160

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 393  VREEVEVLKERIAELMERITQLEVENTYLRAHASQDT 503
            +R+EV VLK+   +L      LE+E   ++ H ++ T
Sbjct: 2495 LRQEVSVLKQNFGQLQNDKEDLEIERDRVKRHLAELT 2531


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,462,484
Number of Sequences: 59808
Number of extensions: 443012
Number of successful extensions: 1448
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1300
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1445
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)