Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0884
         (755 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinestera...    27   0.47 
AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinestera...    27   0.47 
AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinestera...    27   0.47 
DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.            22   2.2  
AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    24   5.8  
AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.           23   7.7  

>AJ515150-1|CAD56157.2|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 27.5 bits (58), Expect = 0.47
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 105 QWPSEVACWQHYVGRGLHTSHTVRPP 28
           +WP   A  +HY+  GL+TS   R P
Sbjct: 653 EWPKHTAHGRHYLELGLNTSFVGRGP 678


>AJ515149-1|CAD56156.1|  737|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 737

 Score = 27.5 bits (58), Expect = 0.47
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 105 QWPSEVACWQHYVGRGLHTSHTVRPP 28
           +WP   A  +HY+  GL+TS   R P
Sbjct: 653 EWPKHTAHGRHYLELGLNTSFVGRGP 678


>AJ488492-1|CAD32684.2|  623|Anopheles gambiae acetylcholinesterase
           protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 0.47
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 105 QWPSEVACWQHYVGRGLHTSHTVRPP 28
           +WP   A  +HY+  GL+TS   R P
Sbjct: 539 EWPKHTAHGRHYLELGLNTSFVGRGP 564


>DQ655702-1|ABG45862.1|  889|Anopheles gambiae Jxc1 protein.
          Length = 889

 Score = 21.8 bits (44), Expect(2) = 2.2
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +3

Query: 213 AGFKLNLTTESQPKPAPTEPP 275
           AGF  NL   +QP PAP  PP
Sbjct: 571 AGFP-NLPN-AQPPPAPPPPP 589



 Score = 21.4 bits (43), Expect(2) = 2.2
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +3

Query: 249 PKPAPTEPPRSPFA 290
           P P P  PP SP A
Sbjct: 586 PPPPPMGPPPSPLA 599


>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = +3

Query: 390  AVREEVEVLKERIAELMERITQLEVENTYLRAHASQDTLAQLPAAQGN 533
            ++ +EVE  +  I +  +  TQLE E   LR    +  LA   A +G+
Sbjct: 939  SMEDEVEAAQSAIRKGNDERTQLEEEANKLREELEEMKLAIEKAHEGS 986


>AY578805-1|AAT07310.1|  753|Anopheles gambiae medea protein.
          Length = 753

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 3/23 (13%)
 Frame = +1

Query: 277 GRLSLGGTRGAPHQAPA---RWP 336
           GRL + G +G PH   A   RWP
Sbjct: 79  GRLQVAGRKGFPHVIYARIWRWP 101


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 736,287
Number of Sequences: 2352
Number of extensions: 13667
Number of successful extensions: 40
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 78170964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)