Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0884
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68119-5|CAA92196.1|  102|Caenorhabditis elegans Hypothetical pr...    74   1e-13
U49947-3|AAK68211.1|  114|Caenorhabditis elegans Hypothetical pr...    73   2e-13
AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical ...    68   8e-12
AF209707-1|AAF28335.1|  522|Caenorhabditis elegans phosphoinosit...    30   1.5  
AC006708-6|AAF60427.2|  522|Caenorhabditis elegans Phosphoinosit...    30   1.5  
AL032637-4|CAA21619.2|  534|Caenorhabditis elegans Hypothetical ...    30   2.0  
AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z29560-10|CAA82663.1|  296|Caenorhabditis elegans Hypothetical p...    29   3.6  

>Z68119-5|CAA92196.1|  102|Caenorhabditis elegans Hypothetical
           protein T18D3.7 protein.
          Length = 102

 Score = 73.7 bits (173), Expect = 1e-13
 Identities = 38/71 (53%), Positives = 48/71 (67%)
 Frame = +3

Query: 309 SASGTSAVAIDNKIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRAH 488
           +A+  + VAIDNKI QAMDLVK+HL FAVREEVE L+  I +L  R+  L  EN  LR +
Sbjct: 26  TATSNTVVAIDNKIVQAMDLVKTHLTFAVREEVETLRTTITDLEARLNALREENRLLREN 85

Query: 489 ASQDTLAQLPA 521
            S + LA + A
Sbjct: 86  VSPEVLAFITA 96


>U49947-3|AAK68211.1|  114|Caenorhabditis elegans Hypothetical
           protein C30G4.7 protein.
          Length = 114

 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 36/60 (60%), Positives = 45/60 (75%)
 Frame = +3

Query: 336 IDNKIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRAHASQDTLAQL 515
           IDNKIEQAMDLVK+HLMFAVREEV+ L+ +I +L   + +LE EN+ L+     DTL QL
Sbjct: 51  IDNKIEQAMDLVKTHLMFAVREEVDGLRGKIFDLENHVRRLEAENSILKRTIPNDTLKQL 110


>AL117203-9|CAB60420.3|  675|Caenorhabditis elegans Hypothetical
           protein Y48C3A.12 protein.
          Length = 675

 Score = 67.7 bits (158), Expect = 8e-12
 Identities = 34/83 (40%), Positives = 52/83 (62%)
 Frame = +3

Query: 309 SASGTSAVAIDNKIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRAH 488
           S +  +   IDNKIEQAM+LVK+HL +AVREEV+ L+  IAEL  ++ + + E TY R +
Sbjct: 471 STTADTHTPIDNKIEQAMELVKTHLTYAVREEVDTLRNTIAELEYQMRESQYECTYYRQN 530

Query: 489 ASQDTLAQLPAAQGNKPAAQPQP 557
            + D + Q  +    + A+  +P
Sbjct: 531 CAPDLIEQASSFVHQQMASHQRP 553


>AF209707-1|AAF28335.1|  522|Caenorhabditis elegans phosphoinositide
           3-kinase adaptersubunit protein.
          Length = 522

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 261 PTEPPRSPFARRNTWCSASGTSAVAIDNKIEQAMDLVKS 377
           PT+PP SP  R ++W S S  +  + D+++     L KS
Sbjct: 481 PTKPPESPEPRPDSWDSPSPDTPSSSDSRLVHPTTLPKS 519


>AC006708-6|AAF60427.2|  522|Caenorhabditis elegans Phosphoinositide
           kinase adaptersubunit protein 1 protein.
          Length = 522

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +3

Query: 261 PTEPPRSPFARRNTWCSASGTSAVAIDNKIEQAMDLVKS 377
           PT+PP SP  R ++W S S  +  + D+++     L KS
Sbjct: 481 PTKPPESPEPRPDSWDSPSPDTPSSSDSRLVHPTTLPKS 519


>AL032637-4|CAA21619.2|  534|Caenorhabditis elegans Hypothetical
           protein Y43F8C.4 protein.
          Length = 534

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 21/68 (30%), Positives = 34/68 (50%)
 Frame = +3

Query: 228 NLTTESQPKPAPTEPPRSPFARRNTWCSASGTSAVAIDNKIEQAMDLVKSHLMFAVREEV 407
           NL TE  P+PAP  PP  P   +N+   +SG   + +D+ +++     K+ + FA   E 
Sbjct: 12  NLDTEP-PQPAPPPPPNLPGNSKNSRPKSSGLDFL-LDSDLDKEPQAPKT-VNFATNREE 68

Query: 408 EVLKERIA 431
              + R A
Sbjct: 69  NTSEMRAA 76


>AC006696-4|AAF39985.1|  215|Caenorhabditis elegans Hypothetical
           protein W08E12.6 protein.
          Length = 215

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = -3

Query: 426 CAPSVPRLLRAPRTSSG-S*PDP*LARSCCRWPPRWCLMRSTTC 298
           CAPS P ++  P    G + P P    +C   PP   L  S TC
Sbjct: 132 CAPSAPIIVNGPPPCFGPACPPPCFGPACAPPPPAPILFGSVTC 175


>Z29560-10|CAA82663.1|  296|Caenorhabditis elegans Hypothetical
           protein K03H1.11 protein.
          Length = 296

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
 Frame = +3

Query: 363 DLVKSHLMFAVREEV-EVLKERIAELMERITQLEVENTYLRAHASQDTLAQLPAAQGNKP 539
           D  + H+    REE+ E+L   + +++  I  L++EN  +    S + LAQL     N P
Sbjct: 63  DEFELHIPKVNREEIQELLHFLMPQIVNEIHSLQLENELVGDEISDEQLAQLLQLTKNAP 122

Query: 540 AAQ 548
             Q
Sbjct: 123 LKQ 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,989,576
Number of Sequences: 27780
Number of extensions: 311260
Number of successful extensions: 1103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1023
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)