Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0884
         (755 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        24   1.3  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      24   1.8  
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.1  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    23   4.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    22   7.1  
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           22   7.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           22   7.1  

>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 61  SADVMLPTSYFRWPL 105
           S DV+LP+ Y RW L
Sbjct: 250 SEDVLLPSVYLRWNL 264


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +3

Query: 15  HETLMEDGRCATCEALGRRNVANKLLQMATAQAHMRTCSHA 137
           H  L+  G C TC+  G+       L+    Q H +  + A
Sbjct: 362 HGNLLPPGVCYTCDVCGKTLSTKLTLKRHKEQQHFQPLNSA 402


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 237 TESQPKPAPTEPPRS 281
           +++ PKPAP  PP S
Sbjct: 335 SDTPPKPAPPPPPPS 349


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -1

Query: 311 GAPRVPPSERRPWWFGW 261
           G   + PS + PW+ GW
Sbjct: 198 GDNMLEPSPKTPWYKGW 214


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 200 T*INCWLQIESDNRIATETGS 262
           T +NCW Q E+    A + G+
Sbjct: 237 TALNCWTQTENSLEKAKQVGA 257


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 200 T*INCWLQIESDNRIATETGS 262
           T +NCW Q E+    A + G+
Sbjct: 108 TALNCWTQTENSLEKAKQVGA 128


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 200 T*INCWLQIESDNRIATETGS 262
           T +NCW Q E+    A + G+
Sbjct: 237 TALNCWTQTENSLEKAKQVGA 257


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 189,413
Number of Sequences: 438
Number of extensions: 3841
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23753925
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)