Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0884
(755 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g37385.1 68418.m04497 hypothetical protein 32 0.47
At2g35480.1 68415.m04346 expressed protein 30 1.4
At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ b... 30 1.9
At4g27595.1 68417.m03964 protein transport protein-related low s... 29 2.5
At2g26520.1 68415.m03182 expressed protein 29 3.3
At5g65685.1 68418.m08268 soluble glycogen synthase-related conta... 29 4.4
At3g47320.1 68416.m05143 hypothetical protein several hypothetic... 29 4.4
At2g41260.2 68415.m05096 glycine-rich protein / late embryogenes... 29 4.4
At2g41260.1 68415.m05095 glycine-rich protein / late embryogenes... 29 4.4
At3g62060.1 68416.m06973 pectinacetylesterase family protein sim... 28 5.8
At1g77580.2 68414.m09032 myosin heavy chain-related low similari... 28 5.8
At1g77580.1 68414.m09033 myosin heavy chain-related low similari... 28 5.8
At5g26170.1 68418.m03113 WRKY family transcription factor DNA-bi... 28 7.7
>At5g37385.1 68418.m04497 hypothetical protein
Length = 142
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
Frame = +3
Query: 303 WCSASGTSAVAIDNKIEQAM---DLVKSHLMFAVREEVEVLKERIAELMERITQLEVENT 473
W A +++K++ A+ L +H + ++RE V +++ I L ER+ EVE
Sbjct: 74 WDQAVTEELEMVNHKLDSALRHGQLACNHALESIRETVHLMQGEIETLKERLLAKEVEID 133
Query: 474 YLRA 485
LRA
Sbjct: 134 RLRA 137
>At2g35480.1 68415.m04346 expressed protein
Length = 195
Score = 30.3 bits (65), Expect = 1.4
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = +1
Query: 7 IGRTRPSWRTDGVRRVKPSADVMLP 81
IGR +W G+ R+KPSA V+LP
Sbjct: 67 IGRNLGNWILRGLDRMKPSAQVLLP 91
>At2g45420.1 68415.m05650 LOB domain protein 18 / lateral organ
boundaries domain protein 18 (LBD18) identical to LOB
DOMAIN 18 [Arabidopsis thaliana] GI:17227164; supported
by full-length cDNA gi:17227163
Length = 262
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +3
Query: 393 VREEVEVLKERIAELMERITQLEVENTYLRAHASQDTLAQLPAAQGN-KPAAQPQP 557
+R+ + I L +++ L+ E +YL+AH + +LP Q +P QPQP
Sbjct: 106 IRDPIYGCVAHIFALQQQVVNLQAEVSYLQAHLAS---LELPQPQTRPQPMPQPQP 158
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 29.5 bits (63), Expect = 2.5
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Frame = +3
Query: 399 EEVEVLKERIAELMERITQLEVENTYL-RAHASQDTLAQ 512
+EVEVLKER AE +++I +L + N L A T+ Q
Sbjct: 744 QEVEVLKEREAENIKQIEELSLSNERLVEKEAKLQTVVQ 782
>At2g26520.1 68415.m03182 expressed protein
Length = 145
Score = 29.1 bits (62), Expect = 3.3
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +3
Query: 246 QPKPAPTEPPRSPFARRNTWCSASGTSAVA 335
+P P+PT PPR P ++ SA VA
Sbjct: 88 RPSPSPTPPPRQPLHHTSSGVSAESEGHVA 117
>At5g65685.1 68418.m08268 soluble glycogen synthase-related contains
weak similarity to Soluble glycogen synthase,
chloroplast precursor (EC 2.4.1.11) (SS III)
(Swiss-Prot:Q43846) [Solanum tuberosum]
Length = 460
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = +3
Query: 390 AVREEVEVLKERIAELMERITQLEVEN 470
A +E+E LK+ EL+ERI QLE E+
Sbjct: 87 AAVDELEQLKKDKEELLERINQLEAES 113
>At3g47320.1 68416.m05143 hypothetical protein several hypothetical
proteins - Arabidopsis thaliana
Length = 142
Score = 28.7 bits (61), Expect = 4.4
Identities = 16/64 (25%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +3
Query: 303 WCSASGTSAVAIDNKIEQAM---DLVKSHLMFAVREEVEVLKERIAELMERITQLEVENT 473
W A +++K++ + L +H + ++RE + +++ I L ER+ EVE
Sbjct: 74 WDQAVTEELEKVNHKLDSTLRHGQLACNHALESIRETIHLMQGEIETLKERLLAKEVEID 133
Query: 474 YLRA 485
L+A
Sbjct: 134 RLKA 137
>At2g41260.2 68415.m05096 glycine-rich protein / late embryogenesis
abundant protein (M17) identical to late-embryogenesis
abundant M17 protein GI:3342551 from [Arabidopsis
thaliana]
Length = 280
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 266 GWSRFRLRFCCQIQFEAS 213
GW R R R+CC+ Q EAS
Sbjct: 85 GWWRGRCRYCCRSQAEAS 102
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 266 GWSRFRLRFCCQIQFEAS 213
GW R R R+CC+ Q EAS
Sbjct: 140 GWWRGRCRYCCRSQAEAS 157
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 266 GWSRFRLRFCCQIQFEAS 213
GW R R R+CC+ Q EAS
Sbjct: 195 GWWRGRCRYCCRSQAEAS 212
>At2g41260.1 68415.m05095 glycine-rich protein / late embryogenesis
abundant protein (M17) identical to late-embryogenesis
abundant M17 protein GI:3342551 from [Arabidopsis
thaliana]
Length = 225
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 266 GWSRFRLRFCCQIQFEAS 213
GW R R R+CC+ Q EAS
Sbjct: 85 GWWRGRCRYCCRSQAEAS 102
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 266 GWSRFRLRFCCQIQFEAS 213
GW R R R+CC+ Q EAS
Sbjct: 140 GWWRGRCRYCCRSQAEAS 157
>At3g62060.1 68416.m06973 pectinacetylesterase family protein
similar to pectinacetylesterase precursor GI:1431629
from [Vigna radiata]; contains Pfam profile: PF03283
pectinacetylesterase
Length = 419
Score = 28.3 bits (60), Expect = 5.8
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -1
Query: 290 SERRPWWFGWSRFRLRFCCQIQFEASN 210
SE P +F W+R +LR+C F +
Sbjct: 135 SEENPDFFNWNRIKLRYCDGASFSGDS 161
>At1g77580.2 68414.m09032 myosin heavy chain-related low similarity
to SP|P08799 Myosin II heavy chain, non muscle
{Dictyostelium discoideum}
Length = 779
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/52 (26%), Positives = 32/52 (61%)
Frame = +3
Query: 330 VAIDNKIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRA 485
V ++++++ + + + ++ E+EVL RI +L E++ +LEVE L++
Sbjct: 456 VELESEVKCNREEAVAQVENSLATEIEVLTCRIKQLEEKLEKLEVEKDELKS 507
>At1g77580.1 68414.m09033 myosin heavy chain-related low similarity
to SP|P08799 Myosin II heavy chain, non muscle
{Dictyostelium discoideum}
Length = 629
Score = 28.3 bits (60), Expect = 5.8
Identities = 14/52 (26%), Positives = 32/52 (61%)
Frame = +3
Query: 330 VAIDNKIEQAMDLVKSHLMFAVREEVEVLKERIAELMERITQLEVENTYLRA 485
V ++++++ + + + ++ E+EVL RI +L E++ +LEVE L++
Sbjct: 422 VELESEVKCNREEAVAQVENSLATEIEVLTCRIKQLEEKLEKLEVEKDELKS 473
>At5g26170.1 68418.m03113 WRKY family transcription factor
DNA-binding protein, WRKY1 Avena sativa, EMBL:AF140554
Length = 173
Score = 27.9 bits (59), Expect = 7.7
Identities = 17/50 (34%), Positives = 27/50 (54%)
Frame = +3
Query: 273 PRSPFARRNTWCSASGTSAVAIDNKIEQAMDLVKSHLMFAVREEVEVLKE 422
P SP + T+ +A+ T++ NK E+ +K + F R EVEVL +
Sbjct: 69 PESPSTK--TYVAATATASADNQNKKEKKK--IKGRVAFKTRSEVEVLDD 114
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,268,392
Number of Sequences: 28952
Number of extensions: 294565
Number of successful extensions: 1055
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1050
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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