Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0883
         (778 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q7VIC5 Cluster: Cation-transporting ATPase; n=1; Helico...    34   3.4  
UniRef50_Q2THV7 Cluster: Membrane-associated DHHC8 zinc finger p...    34   4.6  
UniRef50_A5E618 Cluster: Putative uncharacterized protein; n=1; ...    34   4.6  

>UniRef50_Q7VIC5 Cluster: Cation-transporting ATPase; n=1;
           Helicobacter hepaticus|Rep: Cation-transporting ATPase -
           Helicobacter hepaticus
          Length = 747

 Score = 34.3 bits (75), Expect = 3.4
 Identities = 25/62 (40%), Positives = 35/62 (56%)
 Frame = +1

Query: 337 LSTKVKMLILRILPI*KFIGAVNSWSEAVCSISTIQTLNFTNVLVLSTFWYVFH*SAIFH 516
           LST+ K+++  I  I   I  V SWSE    IS   TL++T +LVLS    V H   +F+
Sbjct: 99  LSTQTKLIVSIIATI---IVVVLSWSEMFIGISLPYTLHYTLLLVLSL--AVMHMGRMFY 153

Query: 517 LQ 522
           L+
Sbjct: 154 LR 155


>UniRef50_Q2THV7 Cluster: Membrane-associated DHHC8 zinc finger
           protein; n=2; Euteleostomi|Rep: Membrane-associated
           DHHC8 zinc finger protein - Fugu rubripes (Japanese
           pufferfish) (Takifugu rubripes)
          Length = 797

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +2

Query: 35  HLPAVHPADQRTRLWQPSPSPSVLSYPNSTISYTSLILLDVSEAT 169
           HLPA+ P    +  ++   SP+ LS  N ++SY SL+   +S AT
Sbjct: 477 HLPALQPPTVTSTPYKSVFSPNTLSNRNGSLSYDSLLHPSISSAT 521


>UniRef50_A5E618 Cluster: Putative uncharacterized protein; n=1;
            Lodderomyces elongisporus NRRL YB-4239|Rep: Putative
            uncharacterized protein - Lodderomyces elongisporus
            (Yeast) (Saccharomyces elongisporus)
          Length = 1911

 Score = 33.9 bits (74), Expect = 4.6
 Identities = 18/43 (41%), Positives = 26/43 (60%)
 Frame = +2

Query: 14   QSSQSQPHLPAVHPADQRTRLWQPSPSPSVLSYPNSTISYTSL 142
            Q S S P++  +H   Q + L Q SP+ S  SYPN +I+ T+L
Sbjct: 1702 QRSSSSPYVQTLHK--QSSLLSQHSPTASTFSYPNPSIAGTAL 1742


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 751,513,001
Number of Sequences: 1657284
Number of extensions: 14422690
Number of successful extensions: 34340
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32853
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34296
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)