Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0883
         (778 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    23   3.6  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    23   3.6  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    21   8.3  

>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = +3

Query: 681 SSSARHLWYVSCIRSDRLGPQRTPW 755
           +++  H WY    +  ++GP++  W
Sbjct: 21  ANAPMHSWYAGYHQGAQMGPEQQMW 45


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 6/25 (24%), Positives = 14/25 (56%)
 Frame = +3

Query: 681 SSSARHLWYVSCIRSDRLGPQRTPW 755
           +++  H WY    +  ++GP++  W
Sbjct: 21  ANAPMHSWYAGYHQGAQMGPEQQMW 45


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.4 bits (43), Expect = 8.3
 Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 11  QQSSQSQPHLPA----VHPADQRTRLWQPSPSPSVLSYPNSTISY 133
           ++S Q Q + P      H ++  + +  PSPS S L+Y +   S+
Sbjct: 240 KESPQMQSYRPTGNITPHGSNTSSLITTPSPSASPLAYQHEYNSF 284


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,206
Number of Sequences: 336
Number of extensions: 3988
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20961338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)