Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0883
         (778 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    31   0.24 
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces...    26   5.2  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    26   5.2  
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    26   6.9  

>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +2

Query: 2   LNCQQSSQSQPHLPAVHPADQRTRLWQPSPSPSVLSYP 115
           +N +QSS S P L    P+   T  + PSPSP+  SYP
Sbjct: 303 MNMKQSSASHPVLQPPAPS---TLQFNPSPSPAAPSYP 337


>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +2

Query: 5   NCQQSSQSQPHLPAVHPADQRTRLWQPSPSPSV 103
           N  QSS+S P+     P  Q+T   +PSP+ ++
Sbjct: 273 NPDQSSRSDPNFVEATPVVQQTPELKPSPNTTI 305


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = +2

Query: 14  QSSQSQPHLPAVHPADQRTRLWQPSP--SPSVLSYPNSTISYTSL 142
           QSSQ   HL    P++++  L  PSP   PS  S  N    Y  L
Sbjct: 142 QSSQHSTHLQFQIPSNEKKSLDDPSPRRKPSFFSKSNLKRKYRYL 186


>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 25.8 bits (54), Expect = 6.9
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = +2

Query: 56  ADQRTRLWQPSPSPSVLSYPNSTISYTS 139
           A Q +RL  P P PS  S P  TIS  S
Sbjct: 173 AKQLSRLPTPLPPPSSSSLPTGTISTNS 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,140,095
Number of Sequences: 5004
Number of extensions: 63627
Number of successful extensions: 195
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)