Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0883
         (778 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    25   2.6  
DQ370046-1|ABD18607.1|  125|Anopheles gambiae putative secreted ...    24   6.0  
AY578803-1|AAT07308.1|  474|Anopheles gambiae mothers against Dp...    24   6.0  

>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative
           cytoskeletal structural protein protein.
          Length = 1645

 Score = 25.0 bits (52), Expect = 2.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 461 MFWSYLHFGMFSTKVLFFTFSTC 529
           +F   LHF +FS    FF+F+ C
Sbjct: 56  IFMFLLHFVLFSFSFPFFSFAPC 78


>DQ370046-1|ABD18607.1|  125|Anopheles gambiae putative secreted
           polypeptide protein.
          Length = 125

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +3

Query: 450 EFYKCSGPIYILVCF 494
           E +KC GP Y L C+
Sbjct: 59  EVFKCCGPCYQLNCY 73


>AY578803-1|AAT07308.1|  474|Anopheles gambiae mothers against Dpp
           protein.
          Length = 474

 Score = 23.8 bits (49), Expect = 6.0
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = +2

Query: 185 YSIYCRLGPILHCRHVWLV 241
           Y + CR+G + HC +  ++
Sbjct: 286 YELNCRVGEVFHCTNTSII 304


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 803,250
Number of Sequences: 2352
Number of extensions: 16084
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 81081585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)