Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0880
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce...    27   3.1  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    25   7.1  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    25   7.1  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    25   7.1  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    25   9.4  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       25   9.4  
SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyc...    25   9.4  

>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 964

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 17/58 (29%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = +2

Query: 239  DAPSTGG--GAAWSPSASRTCRPAHTLRKISYRTRSDIIFRRKEFQSANTSRGSKTRQ 406
            D+PS     GA  SP+ASR   P      IS  T   +  +     S++    SK+++
Sbjct: 833  DSPSAHASPGAKTSPNASRAPEPTGGTNSISQDTTQSLQMQSNSVNSSSMVDASKSKE 890


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 19/77 (24%), Positives = 33/77 (42%)
 Frame = +3

Query: 399 RGRLGAVAPDTPPKTLSAWTHSENQAGTSADYRQYHENYNYNMQQNQSGTRNGNYDSPKP 578
           RG L   A     K++SA  H +N +    +    +EN + N   N+   RN  +  P  
Sbjct: 2   RGELNIPALSRFGKSISASLHHQNGSSRDDNDSNPYENRSSNSGLNR---RNSVFGLPSS 58

Query: 579 PVPAKTYGTKIDATNNS 629
            + ++     + + NNS
Sbjct: 59  GLSSRLSKPSLSSINNS 75


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 377 NTSRGSKTRQTRRRGSRHPTKNTLSLDSLGEPSRH 481
           +T+ GS T       S HP+ N  S++   E  RH
Sbjct: 11  STNVGSSTDTLSTSASLHPSMNAGSVNEYSEQQRH 45


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +2

Query: 407 TRRRGSRHPTKNTLSLDSLGEPSRHIGRLQT 499
           TRR   +H   NTL  +    PS HI R ++
Sbjct: 3   TRRLTRQHLLANTLGNNDENHPSNHIARAKS 33


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +3

Query: 507 ENYNYNMQQNQSGTRNGNYDS 569
           +NYN N  QN     N NY++
Sbjct: 611 QNYNNNNNQNYGNNNNQNYNN 631


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = +3

Query: 456 THSENQAGTSADYRQYHENYNYNMQQNQSGTRNGNYDSPKP 578
           TH+  Q+  +  Y +       NMQQ     +N NY + +P
Sbjct: 647 THNPFQSQQATGYYKQPMQQQQNMQQPYYNQQNYNYQNQQP 687


>SPAC16C9.04c |||CCR4-Not complex subunit Mot2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 489

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +1

Query: 535 IRVVLEMATTILPNPQC---PPKHTAPKLTPRIIHNRLR 642
           + VV   ATTIL + +    PP     KL+P ++  RLR
Sbjct: 327 VNVVPGHATTILHHEESSALPPTAAWAKLSPSVLQERLR 365


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,647
Number of Sequences: 5004
Number of extensions: 57161
Number of successful extensions: 179
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)