Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0880
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_05_0019 - 8049145-8049334,8059808-8060618,8060708-8060783,806... 31 0.79
02_03_0359 + 18098043-18098435,18098526-18098642,18098913-18099032 30 1.4
06_01_0640 - 4644576-4645007,4645090-4646163,4646196-4646258 30 1.8
10_08_0121 + 14977645-14977734,14978975-14979062,14979271-14979617 29 3.2
04_01_0567 - 7263744-7263922,7264020-7264259,7264919-7264982,726... 29 3.2
03_02_0547 - 9389188-9389476,9389577-9389938 29 3.2
09_05_0008 + 20042390-20042845,20043323-20043457,20043539-200436... 29 4.2
06_03_1309 + 29223197-29223240,29223358-29223592,29223695-292237... 28 5.6
12_02_0503 - 19756561-19757991,19758606-19759967 28 7.4
09_02_0118 - 4451228-4452565 28 7.4
03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238 28 7.4
03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598 28 7.4
12_01_0752 - 6798938-6799312,6799628-6799768,6800257-6800325,680... 27 9.7
12_01_0357 + 2720860-2721066,2721169-2721384,2721481-2723608,272... 27 9.7
05_03_0016 + 7383227-7383415 27 9.7
04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903 27 9.7
01_06_0058 - 26056334-26056630,26057063-26057365,26057748-260578... 27 9.7
>10_05_0019 -
8049145-8049334,8059808-8060618,8060708-8060783,
8060856-8061008
Length = 409
Score = 31.1 bits (67), Expect = 0.79
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 391 LENAADSAPWLPTPHQKHSQPGLTRRTKPAHR 486
+EN D+ + PTP H++ G+ + P HR
Sbjct: 193 VENCVDTPGYTPTPSPGHNETGVESNSSPLHR 224
>02_03_0359 + 18098043-18098435,18098526-18098642,18098913-18099032
Length = 209
Score = 30.3 bits (65), Expect = 1.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +2
Query: 194 RLHRHWHTRQCPTV*DAPSTG 256
R+H HWH CP++ A S G
Sbjct: 184 RMHSHWHMHHCPSLPQATSYG 204
>06_01_0640 - 4644576-4645007,4645090-4646163,4646196-4646258
Length = 522
Score = 29.9 bits (64), Expect = 1.8
Identities = 27/79 (34%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +2
Query: 302 AHTLRKISYRTRSDIIFRRKEFQSANTSRGSKTRQTRRRGSRH-PTKNTLSLDSLGEPSR 478
+HT SYR ++ ++E QS S TR GS++ PTK L L + R
Sbjct: 208 SHTAFGSSYREGKEVFVAQRELQSI---AFSAINSTRFPGSQYIPTKTNLRRRHLAKKVR 264
Query: 479 HIGRLQTIPRELQLQHAAE 535
G L I RE Q A E
Sbjct: 265 --GTLMAIIRERQAAAAKE 281
>10_08_0121 + 14977645-14977734,14978975-14979062,14979271-14979617
Length = 174
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/49 (38%), Positives = 24/49 (48%)
Frame = -1
Query: 513 SSRGIVCSRPMCRLGSPSESRLRVFLVGCREPRRRVCRVFEPLEVLALW 367
S + + M LGS RL+VF+VGCR P R PL + A W
Sbjct: 125 SGPSVEAADEMTALGSTG-LRLQVFIVGCRAPAR-------PLPISAAW 165
>04_01_0567 -
7263744-7263922,7264020-7264259,7264919-7264982,
7265088-7265393,7265652-7265866,7266195-7266489,
7266596-7266655,7267091-7267717,7268510-7268596,
7269292-7269612,7270051-7270224,7272806-7275022
Length = 1594
Score = 29.1 bits (62), Expect = 3.2
Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +2
Query: 248 STG-GGAAWSPSASRTCRPAHTLRKISYRTRSDIIFRRKEFQSANTSRGSK 397
STG GGAA R+C P H SY T S + + + S+GS+
Sbjct: 230 STGLGGAAIPDGEDRSCVPGHAAAAASYSTASWLSLATFSWINPLISKGSR 280
>03_02_0547 - 9389188-9389476,9389577-9389938
Length = 216
Score = 29.1 bits (62), Expect = 3.2
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = +2
Query: 194 RLHRHWHTRQCPTV*DAPSTGGGAAWSPSASRTCRPAHTLRKISYRTR 337
R+H H PT+ AP+ G++W+P + C H R + R +
Sbjct: 25 RVHAR-HLPGLPTLAAAPARTNGSSWAPGKTEHCTAQHKRRLQAVRDK 71
>09_05_0008 +
20042390-20042845,20043323-20043457,20043539-20043679,
20043771-20043882,20044084-20044154,20044251-20044405,
20044484-20044595,20044932-20045033,20045116-20045176,
20045251-20045422,20045512-20045608,20045692-20045786,
20045881-20046014,20046208-20046422
Length = 685
Score = 28.7 bits (61), Expect = 4.2
Identities = 24/105 (22%), Positives = 47/105 (44%), Gaps = 12/105 (11%)
Frame = +3
Query: 330 EREVILSSGEKNSKVPILQEARKRGR------LGAVAPDTPPKTLSAWTHSENQAG---- 479
+REVIL+ G ++ K +L R + + PP+ + A+ H + G
Sbjct: 392 QREVILA-GFRSGKFLVLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGN 450
Query: 480 TSADYRQYHENYNYNMQ--QNQSGTRNGNYDSPKPPVPAKTYGTK 608
T + Y +N+ + +SG + + +P+P A++ GT+
Sbjct: 451 TGVAVMLFEPRYKFNVNRIERESGVKFEHISAPQPTDVAQSAGTE 495
>06_03_1309 + 29223197-29223240,29223358-29223592,29223695-29223783,
29223870-29223968,29224065-29224158,29224297-29224514,
29224861-29224967,29225298-29225472,29225596-29225743,
29226548-29226596,29228016-29228162,29229990-29229996,
29230417-29230482,29230773-29231991,29232073-29233149,
29233226-29233355,29233519-29233617,29233817-29233878,
29234429-29234533
Length = 1389
Score = 28.3 bits (60), Expect = 5.6
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 257 GGAAWSPSASRTCRPAHTLRKISYRTRSDIIFRRKEFQSANTSRGSKTRQT 409
GG + +P + + PA L + + S +RK +ANT+ S++R+T
Sbjct: 1202 GGGSSTPDSLQVVNPADNLMLSNTQQSSKQSRKRKSRTAANTNSASQSRKT 1252
>12_02_0503 - 19756561-19757991,19758606-19759967
Length = 930
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 156 HDVIAITDAFDFRLIHKTQIIETLKCSRKTMKG 58
H +I++ DA DF+ + K + I ++C+R + G
Sbjct: 730 HMLISLPDASDFKRMSKLESIRIIECNRLSSLG 762
>09_02_0118 - 4451228-4452565
Length = 445
Score = 27.9 bits (59), Expect = 7.4
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -1
Query: 381 VLALWNSFLLKIISLLVL*EILRSVCAGRQVREALG--LQAAPPPVLG 244
V AL + LL I+ L ++LR+ + R A + AAPPP+LG
Sbjct: 14 VAALTDDTLLDILRRLAPADLLRAALVCHRWRRAAARCVMAAPPPLLG 61
>03_05_0918 - 28785233-28786613,28786894-28787140,28787773-28788238
Length = 697
Score = 27.9 bits (59), Expect = 7.4
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 165 GYCTSSGSFCVSTGT 209
GYC + G FCVST T
Sbjct: 270 GYCLARGCFCVSTST 284
>03_05_0759 - 27500941-27501568,27503540-27504154,27504228-27504598
Length = 537
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +1
Query: 190 SASPPALAHSTVSHRIGCPQHRRRRCLESQRLPDLPPCTHTPQNFL 327
+A+P A A + + P R RC S R PP H P +L
Sbjct: 487 AATPVARAMALTAPPTSSPPGSRLRCTASARATSPPPPRHPPHLYL 532
>12_01_0752 -
6798938-6799312,6799628-6799768,6800257-6800325,
6800407-6800454,6801740-6801836,6801922-6802001,
6802099-6802170,6802335-6802429,6802853-6802934,
6805476-6805853
Length = 478
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/46 (26%), Positives = 19/46 (41%)
Frame = +3
Query: 459 HSENQAGTSADYRQYHENYNYNMQQNQSGTRNGNYDSPKPPVPAKT 596
H+ N + H N++ N +Q G R G + PP +T
Sbjct: 385 HNNNHFNNQNYHNGQHHNHHANNHHHQGGNRGGAHHVGTPPNQQQT 430
>12_01_0357 +
2720860-2721066,2721169-2721384,2721481-2723608,
2723699-2724124,2724242-2724546,2724660-2724823,
2724899-2724980
Length = 1175
Score = 27.5 bits (58), Expect = 9.7
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +3
Query: 372 VPILQEARKRGRLGAVAPDTPPKTLSAWTHSENQAGTSADYRQYHENYNYNMQQNQSGTR 551
+P+ A +G+ A+AP TP T + + Q Y+Q++ YN MQQ Q +
Sbjct: 223 LPVAPTAASQGQ--ALAPQTP--TAEQY---QQQLQYQQYYQQHYPGYNPYMQQYQQYGQ 275
Query: 552 NGNYDSPKPPV 584
Y P+ +
Sbjct: 276 YQQYTQPQTQI 286
>05_03_0016 + 7383227-7383415
Length = 62
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +2
Query: 359 KEFQSANTSRGSKTRQTRRRGSRHPTKNTLSLDSLGEPSRHIGRL 493
+E Q+ KTR R+ GS +++LSL S GE + GRL
Sbjct: 11 RECQAGAVWEFDKTRVPRQLGSLALHRSSLSLSSTGEETGGRGRL 55
>04_03_0196 - 12533947-12534470,12536577-12537039,12537673-12537903
Length = 405
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +2
Query: 227 PTV*DAPSTGGGAA-WSPSASRTCRPAH 307
P V A GGGA W+P S T RP H
Sbjct: 247 PHVSGARGEGGGAGTWAPRVSGTKRPVH 274
>01_06_0058 -
26056334-26056630,26057063-26057365,26057748-26057891,
26057947-26058702,26058844-26059088,26059177-26060079,
26060163-26060225,26060537-26061025,26061211-26061291,
26061801-26061956,26062371-26062416
Length = 1160
Score = 27.5 bits (58), Expect = 9.7
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +3
Query: 402 GRLGAVAPDTPPKTLSAWTHSENQAGTSADYRQYHENY 515
G++ V +TPP+ + WT S+ A D +Y +
Sbjct: 345 GKIKLVQNETPPELMRLWTSSDPDAKHFRDNNRYFNGH 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,411,126
Number of Sequences: 37544
Number of extensions: 433415
Number of successful extensions: 1607
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1607
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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