Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0880
         (648 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.          29   0.096
AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.       27   0.51 
AY750997-1|AAV31069.1|  153|Anopheles gambiae peritrophin-1 prot...    25   0.61 
AY344828-1|AAR02439.1|  153|Anopheles gambiae peritrophin A prot...    25   0.61 
AY344827-1|AAR02438.1|  153|Anopheles gambiae peritrophin A prot...    25   0.61 
AY344826-1|AAR02437.1|  153|Anopheles gambiae peritrophin A prot...    25   0.61 
AY344823-1|AAR02434.1|  153|Anopheles gambiae peritrophin A prot...    25   0.61 
AY344825-1|AAR02436.1|  153|Anopheles gambiae peritrophin A prot...    24   0.80 
AY344824-1|AAR02435.1|  153|Anopheles gambiae peritrophin A prot...    24   0.80 
EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calc...    25   2.1  
AF030431-1|AAC39127.1|  153|Anopheles gambiae peritrophin 1 prot...    23   2.2  
L04753-1|AAA29357.1|  511|Anopheles gambiae alpha-amylase protein.     25   2.7  
AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative FGF-sign...    23   8.3  

>CR954256-3|CAJ14144.1|  659|Anopheles gambiae cyclin protein.
          Length = 659

 Score = 29.5 bits (63), Expect = 0.096
 Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
 Frame = +2

Query: 245 PSTGGGAAWSPSASRTCRPAHTLRKISYRTRSDIIFRRKEFQSANTSRGSKTR-QTRRRG 421
           P T GG        R+ R        S R+RS  + R     S + SRGS++R +T +  
Sbjct: 390 PDTAGGGTVGDGKKRSSRSRSKSLSKSSRSRSRSLSRS---VSRSRSRGSRSRSRTSQSR 446

Query: 422 SRHPTKNTLSLDSLGEPSR-HI-GRL--QTIP 505
           SR  T+ + S      P+R H+  RL  +TIP
Sbjct: 447 SRSKTRTSRSRSRTPLPARGHVRARLTRRTIP 478


>AY135184-1|AAN17505.1| 1009|Anopheles gambiae laccase 1 protein.
          Length = 1009

 Score = 27.1 bits (57), Expect = 0.51
 Identities = 15/48 (31%), Positives = 17/48 (35%)
 Frame = -1

Query: 546 YHSDSAACCNCSSRGIVCSRPMCRLGSPSESRLRVFLVGCREPRRRVC 403
           Y + S AC NC      C RP C  G      + V       P   VC
Sbjct: 311 YRTLSKACYNCPYNATDCERPHCITGDGVRRNVAVINRMMPGPAIEVC 358


>AY750997-1|AAV31069.1|  153|Anopheles gambiae peritrophin-1
           protein.
          Length = 153

 Score = 24.6 bits (51), Expect(2) = 0.61
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 406 DSAPWLPTPHQKHSQPGLTRRTKPAHRP 489
           DS      P Q    PG+T  T+PA +P
Sbjct: 64  DSQKQCDYPAQAQCAPGVTPNTEPASKP 91



 Score = 20.6 bits (41), Expect(2) = 0.61
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +1

Query: 571 PNPQCPPKH 597
           P+P CPP++
Sbjct: 91  PSPNCPPEY 99


>AY344828-1|AAR02439.1|  153|Anopheles gambiae peritrophin A
           protein.
          Length = 153

 Score = 24.6 bits (51), Expect(2) = 0.61
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 406 DSAPWLPTPHQKHSQPGLTRRTKPAHRP 489
           DS      P Q    PG+T  T+PA +P
Sbjct: 64  DSQKQCDYPSQAQCAPGVTPNTEPAPKP 91



 Score = 20.6 bits (41), Expect(2) = 0.61
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +1

Query: 571 PNPQCPPKH 597
           P+P CPP++
Sbjct: 91  PSPNCPPEY 99


>AY344827-1|AAR02438.1|  153|Anopheles gambiae peritrophin A
           protein.
          Length = 153

 Score = 24.6 bits (51), Expect(2) = 0.61
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 406 DSAPWLPTPHQKHSQPGLTRRTKPAHRP 489
           DS      P Q    PG+T  T+PA +P
Sbjct: 64  DSQKQCDYPSQAQCAPGVTPNTEPAPKP 91



 Score = 20.6 bits (41), Expect(2) = 0.61
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +1

Query: 571 PNPQCPPKH 597
           P+P CPP++
Sbjct: 91  PSPNCPPEY 99


>AY344826-1|AAR02437.1|  153|Anopheles gambiae peritrophin A
           protein.
          Length = 153

 Score = 24.6 bits (51), Expect(2) = 0.61
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 406 DSAPWLPTPHQKHSQPGLTRRTKPAHRP 489
           DS      P Q    PG+T  T+PA +P
Sbjct: 64  DSQKQCDYPSQAQCAPGVTPNTEPAPKP 91



 Score = 20.6 bits (41), Expect(2) = 0.61
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +1

Query: 571 PNPQCPPKH 597
           P+P CPP++
Sbjct: 91  PSPNCPPEY 99


>AY344823-1|AAR02434.1|  153|Anopheles gambiae peritrophin A
           protein.
          Length = 153

 Score = 24.6 bits (51), Expect(2) = 0.61
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 406 DSAPWLPTPHQKHSQPGLTRRTKPAHRP 489
           DS      P Q    PG+T  T+PA +P
Sbjct: 64  DSQKQCDYPAQAQCAPGVTPNTEPASKP 91



 Score = 20.6 bits (41), Expect(2) = 0.61
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +1

Query: 571 PNPQCPPKH 597
           P+P CPP++
Sbjct: 91  PSPNCPPEY 99


>AY344825-1|AAR02436.1|  153|Anopheles gambiae peritrophin A
           protein.
          Length = 153

 Score = 24.2 bits (50), Expect(2) = 0.80
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 406 DSAPWLPTPHQKHSQPGLTRRTKPAHRP 489
           DS      P Q    PG+T  T+PA +P
Sbjct: 64  DSQKQCDYPAQAQCAPGVTPNTEPAPKP 91



 Score = 20.6 bits (41), Expect(2) = 0.80
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +1

Query: 571 PNPQCPPKH 597
           P+P CPP++
Sbjct: 91  PSPNCPPEY 99


>AY344824-1|AAR02435.1|  153|Anopheles gambiae peritrophin A
           protein.
          Length = 153

 Score = 24.2 bits (50), Expect(2) = 0.80
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +1

Query: 406 DSAPWLPTPHQKHSQPGLTRRTKPAHRP 489
           DS      P Q    PG+T  T+PA +P
Sbjct: 64  DSQKQCDYPAQAQCAPGVTPNTEPAPKP 91



 Score = 20.6 bits (41), Expect(2) = 0.80
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +1

Query: 571 PNPQCPPKH 597
           P+P CPP++
Sbjct: 91  PSPNCPPEY 99


>EF990671-1|ABS30732.1| 1256|Anopheles gambiae voltage-gated calcium
            channel alpha2-delta subunit 1 protein.
          Length = 1256

 Score = 25.0 bits (52), Expect = 2.1
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 4/59 (6%)
 Frame = +3

Query: 435  PKTLSAWTHSE-NQAGTSA--DYRQY-HENYNYNMQQNQSGTRNGNYDSPKPPVPAKTY 599
            P  + AW +S  N  GT    D   Y +E  +Y +    S     +YD    P P +++
Sbjct: 1044 PTPIGAWQNSNYNYDGTDDIDDEDTYDYEQPDYELPPEHSDVTTPDYDQRSTPTPQRSH 1102



 Score = 23.0 bits (47), Expect = 8.3
 Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +1

Query: 424  PTPHQKHSQPGLTRRTKPAH-RP 489
            PTP + H+Q G      PAH RP
Sbjct: 1096 PTPQRSHTQAGPRVVPDPAHARP 1118


>AF030431-1|AAC39127.1|  153|Anopheles gambiae peritrophin 1
           protein.
          Length = 153

 Score = 22.6 bits (46), Expect(2) = 2.2
 Identities = 10/28 (35%), Positives = 13/28 (46%)
 Frame = +1

Query: 406 DSAPWLPTPHQKHSQPGLTRRTKPAHRP 489
           DS      P Q    PG+T  T+P  +P
Sbjct: 64  DSQKQCDYPAQAQCAPGVTPNTEPVPKP 91



 Score = 20.6 bits (41), Expect(2) = 2.2
 Identities = 5/9 (55%), Positives = 8/9 (88%)
 Frame = +1

Query: 571 PNPQCPPKH 597
           P+P CPP++
Sbjct: 91  PSPNCPPEY 99


>L04753-1|AAA29357.1|  511|Anopheles gambiae alpha-amylase protein.
          Length = 511

 Score = 24.6 bits (51), Expect = 2.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 255 PVLGASYTVGHCRVCQCRWRRRMNHLMYNN 166
           P++    T G   VC+ RWR+  + + + N
Sbjct: 376 PIINPDKTCGGGWVCEHRWRQMYSMIHFRN 405


>AJ439060-10|CAD27761.1| 1197|Anopheles gambiae putative
           FGF-signaling promoter protein.
          Length = 1197

 Score = 23.0 bits (47), Expect = 8.3
 Identities = 12/33 (36%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
 Frame = +3

Query: 549 RNGNY--DSPKPPVPAKTYGTKIDATNNSQQIT 641
           R G+Y   +P PP P    GT     +NS   T
Sbjct: 66  RGGDYADSAPSPPTPPTRNGTIFRYRSNSASCT 98


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 729,176
Number of Sequences: 2352
Number of extensions: 16007
Number of successful extensions: 46
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 63977715
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)