Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0880
(648 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-4|AAG00011.1| 175|Caenorhabditis elegans Hypothetical pr... 31 0.70
Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical pr... 30 1.6
Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical pr... 30 1.6
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr... 29 2.1
U23413-1|AAA64290.2| 182|Caenorhabditis elegans Hypothetical pr... 29 3.8
AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical ... 29 3.8
Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical pr... 28 5.0
Z78411-2|CAB01646.1| 285|Caenorhabditis elegans Hypothetical pr... 28 6.6
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 28 6.6
U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast... 28 6.6
Z73905-5|CAD44103.1| 175|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z69903-5|CAH60762.2| 497|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z69903-4|CAA93775.3| 479|Caenorhabditis elegans Hypothetical pr... 27 8.7
Z69903-3|CAI79241.1| 480|Caenorhabditis elegans Hypothetical pr... 27 8.7
U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical pr... 27 8.7
U39676-2|AAB37031.1| 143|Caenorhabditis elegans Hypothetical pr... 27 8.7
U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical pr... 27 8.7
U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical pr... 27 8.7
AY836558-1|AAW21316.1| 479|Caenorhabditis elegans casein kinase... 27 8.7
AY836556-1|AAW21314.1| 479|Caenorhabditis elegans casein kinase... 27 8.7
AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical... 27 8.7
AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical... 27 8.7
AF535153-1|AAN17799.1| 175|Caenorhabditis elegans putative tran... 27 8.7
>U41538-4|AAG00011.1| 175|Caenorhabditis elegans Hypothetical
protein R04E5.9 protein.
Length = 175
Score = 31.1 bits (67), Expect = 0.70
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 1/68 (1%)
Frame = +2
Query: 311 LRKISYRTRSDIIFRRKEFQSANTSRGSKTRQT-RRRGSRHPTKNTLSLDSLGEPSRHIG 487
L KI+ R R I R++ ++ +R SKT T RR+G++ K T GE IG
Sbjct: 32 LPKIAARQRKSKIVRKQGRKTKRKTRKSKTGATKRRKGTKRRRKTTSKSLDKGE---SIG 88
Query: 488 RLQTIPRE 511
R++ RE
Sbjct: 89 RVKRYGRE 96
>Z81064-5|CAB02964.2| 1392|Caenorhabditis elegans Hypothetical
protein F16B12.6 protein.
Length = 1392
Score = 29.9 bits (64), Expect = 1.6
Identities = 22/69 (31%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
Frame = +1
Query: 274 SQRLPDLPPCTHTPQNFL*NEK*YYLQEKRIPKCQYFKRLENAADS-APWLPTPHQKHSQ 450
+ RLPDLPP T F Y+ +P C ++ +AAD +PW P
Sbjct: 510 NNRLPDLPPLIETVGVFA-----YF-----VPACHVVNQIHHAADGLSPWTTNPGAGEGT 559
Query: 451 PGL-TRRTK 474
P + R TK
Sbjct: 560 PTVRVRSTK 568
>Z69634-6|CAD01081.2| 490|Caenorhabditis elegans Hypothetical
protein B0001.8 protein.
Length = 490
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 317 KISYRTRSDIIFRRKEFQSANTSRGSKTRQTRRRGSRH 430
+ +R RS FR ++F N+ R + R RGSRH
Sbjct: 179 RYGHRQRSISPFRNQQFDQRNSRRDNYPRNQSPRGSRH 216
>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical protein
C18H2.1 protein.
Length = 1770
Score = 29.5 bits (63), Expect = 2.1
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -1
Query: 207 CRWRRRMNHLMYNNRYNHDVIAITDAFDFRLIHKTQIIETLKCSRKTMKGFNA*TIHRNV 28
C R++ ++ +++YNHD +T+ + KT E + +R+T + HRN
Sbjct: 1460 CNMSRKITNMSQSSKYNHDSQYVTETRTVMISPKTPGGE-YRLARETRTFLREPSTHRNA 1518
Query: 27 TVNT 16
+ T
Sbjct: 1519 PLQT 1522
>U23413-1|AAA64290.2| 182|Caenorhabditis elegans Hypothetical
protein B0353.1 protein.
Length = 182
Score = 28.7 bits (61), Expect = 3.8
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 522 NMQQNQSGTRNGNYDSPKPPVPAKTYGTKIDATN 623
+M + +G+ + + PKPPVP K G +ID N
Sbjct: 148 SMASSLNGSIDIDIYKPKPPVPIKPKGLRIDHLN 181
>AC024777-5|AAF60564.1| 506|Caenorhabditis elegans Hypothetical
protein Y42H9AR.1 protein.
Length = 506
Score = 28.7 bits (61), Expect = 3.8
Identities = 19/72 (26%), Positives = 28/72 (38%)
Frame = +3
Query: 414 AVAPDTPPKTLSAWTHSENQAGTSADYRQYHENYNYNMQQNQSGTRNGNYDSPKPPVPAK 593
A AP + P + + S +QA DY Q + T +Y + +PPVP
Sbjct: 338 APAPVSSPTPVQQYQQSYSQAQPPVDYYQQQQQQQAYQPPVNPPT---SYQAYQPPVPTS 394
Query: 594 TYGTKIDATNNS 629
Y +NS
Sbjct: 395 YYPPAASTASNS 406
>Z34802-8|CAH10787.1| 704|Caenorhabditis elegans Hypothetical
protein M88.5b protein.
Length = 704
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/40 (25%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 459 HSENQAGTSADYRQ-YHENYNYNMQQNQSGTRNGNYDSPK 575
H +NQ + ++Q +H++ N+N +N + + +G + P+
Sbjct: 136 HQQNQQHQAGQHQQSHHQSQNHNQHRNHNQSHSGPHHIPQ 175
>Z34802-7|CAA84338.2| 828|Caenorhabditis elegans Hypothetical
protein M88.5a protein.
Length = 828
Score = 28.3 bits (60), Expect = 5.0
Identities = 10/40 (25%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +3
Query: 459 HSENQAGTSADYRQ-YHENYNYNMQQNQSGTRNGNYDSPK 575
H +NQ + ++Q +H++ N+N +N + + +G + P+
Sbjct: 260 HQQNQQHQAGQHQQSHHQSQNHNQHRNHNQSHSGPHHIPQ 299
>Z78411-2|CAB01646.1| 285|Caenorhabditis elegans Hypothetical
protein F02D8.2 protein.
Length = 285
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +3
Query: 492 YRQYHENYNYNMQQNQSGTRNGNYDSPKPPVPAKTYGT 605
Y Y+++ NYN Q + NY P P PA +Y T
Sbjct: 43 YSGYYQSRNYNPPQQRF-----NYGLPPPTPPANSYAT 75
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 27.9 bits (59), Expect = 6.6
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 456 THSENQAGTSADYRQYHENYNYNMQQNQSGTRNGNYDSPKPP 581
+H Q G A Y+Q NMQQ Q+ + G S P
Sbjct: 2771 SHQSMQQGHQAGYQQTSNQMQMNMQQQQNRQQGGPQQSFSGP 2812
>U42436-5|AAF99894.2| 796|Caenorhabditis elegans Not-like (yeast
ccr4/not complexcomponent) protein 4, isoform a protein.
Length = 796
Score = 27.9 bits (59), Expect = 6.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 532 RIRVVLEMATTILPNPQCPPKHTA 603
+I+ ++ AT LP P PP HTA
Sbjct: 136 KIQKIVTSATPSLPAPHLPPSHTA 159
>Z73905-5|CAD44103.1| 175|Caenorhabditis elegans Hypothetical
protein C32C4.5a protein.
Length = 175
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 571 PNPQCPPKHTAPKLTP 618
P P+CP T PK+TP
Sbjct: 72 PTPECPLSPTTPKMTP 87
>Z69903-5|CAH60762.2| 497|Caenorhabditis elegans Hypothetical
protein F46F2.2c protein.
Length = 497
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 415 PWLPTPHQKHSQPGLTRRTKPAHRP 489
P +P P Q+H QP L ++ +P+ P
Sbjct: 81 PVIPPPIQQHQQPPLLQQAQPSQIP 105
>Z69903-4|CAA93775.3| 479|Caenorhabditis elegans Hypothetical
protein F46F2.2a protein.
Length = 479
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 415 PWLPTPHQKHSQPGLTRRTKPAHRP 489
P +P P Q+H QP L ++ +P+ P
Sbjct: 81 PVIPPPIQQHQQPPLLQQAQPSQIP 105
>Z69903-3|CAI79241.1| 480|Caenorhabditis elegans Hypothetical
protein F46F2.2d protein.
Length = 480
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 415 PWLPTPHQKHSQPGLTRRTKPAHRP 489
P +P P Q+H QP L ++ +P+ P
Sbjct: 81 PVIPPPIQQHQQPPLLQQAQPSQIP 105
>U80439-8|AAB37646.3| 1724|Caenorhabditis elegans Hypothetical
protein C01G8.9a protein.
Length = 1724
Score = 27.5 bits (58), Expect = 8.7
Identities = 15/55 (27%), Positives = 23/55 (41%)
Frame = +3
Query: 423 PDTPPKTLSAWTHSENQAGTSADYRQYHENYNYNMQQNQSGTRNGNYDSPKPPVP 587
P PP + + S Q A Y + + + QQ+Q + G P+PP P
Sbjct: 760 PGAPPP--AGFHPSHPQHPQHAQYLAWQQQRYHQQQQHQQQQQQGAPGGPRPPYP 812
>U39676-2|AAB37031.1| 143|Caenorhabditis elegans Hypothetical
protein C23F12.3 protein.
Length = 143
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/43 (27%), Positives = 21/43 (48%)
Frame = +3
Query: 417 VAPDTPPKTLSAWTHSENQAGTSADYRQYHENYNYNMQQNQSG 545
V PD+ + T + + T+ADY + N +N + N+ G
Sbjct: 88 VKPDSGYALVKTPTKRDGMSRTTADYTSHSTNKQHNKEMNRMG 130
>U00063-8|AAM48535.1| 1031|Caenorhabditis elegans Hypothetical
protein F56C9.10b protein.
Length = 1031
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 275 PSASRTCRPAHTLRKISYRTRSDIIFRRKEFQSANTSRGSKT 400
P+A + PA R+ +R ++FR K + S +++ +KT
Sbjct: 684 PAAQASSSPAVAARRRLEVSRMSVMFRMKSYNSTTSTKTAKT 725
>U00063-7|AAK18965.1| 1028|Caenorhabditis elegans Hypothetical
protein F56C9.10a protein.
Length = 1028
Score = 27.5 bits (58), Expect = 8.7
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +2
Query: 275 PSASRTCRPAHTLRKISYRTRSDIIFRRKEFQSANTSRGSKT 400
P+A + PA R+ +R ++FR K + S +++ +KT
Sbjct: 681 PAAQASSSPAVAARRRLEVSRMSVMFRMKSYNSTTSTKTAKT 722
>AY836558-1|AAW21316.1| 479|Caenorhabditis elegans casein kinase I
epsilon/delta kin-20C protein.
Length = 479
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 415 PWLPTPHQKHSQPGLTRRTKPAHRP 489
P +P P Q+H QP L ++ +P+ P
Sbjct: 81 PVIPPPIQQHQQPPLLQQAQPSQIP 105
>AY836556-1|AAW21314.1| 479|Caenorhabditis elegans casein kinase I
epsilon/delta kin-20A protein.
Length = 479
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 415 PWLPTPHQKHSQPGLTRRTKPAHRP 489
P +P P Q+H QP L ++ +P+ P
Sbjct: 81 PVIPPPIQQHQQPPLLQQAQPSQIP 105
>AL032623-17|CAN86638.1| 1398|Caenorhabditis elegans Hypothetical
protein Y43F8B.3b protein.
Length = 1398
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 567 NRSCHF*YHSDSAACCNCSSRGIVCSRPMCR 475
N CH + DS C C S G CS P+ R
Sbjct: 775 NMWCHIGANQDSTVC--CPSEGDPCSLPLAR 803
>AL032623-16|CAA21511.2| 1816|Caenorhabditis elegans Hypothetical
protein Y43F8B.3a protein.
Length = 1816
Score = 27.5 bits (58), Expect = 8.7
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -1
Query: 567 NRSCHF*YHSDSAACCNCSSRGIVCSRPMCR 475
N CH + DS C C S G CS P+ R
Sbjct: 1193 NMWCHIGANQDSTVC--CPSEGDPCSLPLAR 1221
>AF535153-1|AAN17799.1| 175|Caenorhabditis elegans putative
transcription factor MAB-23 protein.
Length = 175
Score = 27.5 bits (58), Expect = 8.7
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 571 PNPQCPPKHTAPKLTP 618
P P+CP T PK+TP
Sbjct: 72 PTPECPLSPTTPKMTP 87
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,898,820
Number of Sequences: 27780
Number of extensions: 346393
Number of successful extensions: 1350
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1348
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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