Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0880
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g66840.1 68418.m08427 SAP domain-containing protein contains ...    31   0.87 
At5g09610.1 68418.m01112 pumilio/Puf RNA-binding domain-containi...    30   1.2  
At3g02810.1 68416.m00273 protein kinase family protein contains ...    30   1.2  
At4g15960.1 68417.m02423 epoxide hydrolase, putative similar to ...    29   2.0  
At5g51300.2 68418.m06360 splicing factor-related contains simila...    28   4.7  
At5g51300.1 68418.m06359 splicing factor-related contains simila...    28   4.7  
At3g20640.1 68416.m02612 ethylene-responsive protein -related co...    28   4.7  
At5g66070.1 68418.m08324 zinc finger (C3HC4-type RING finger) fa...    28   6.1  
At1g28400.1 68414.m03492 expressed protein similar to E6 (GI:100...    28   6.1  
At4g35840.1 68417.m05091 zinc finger (C3HC4-type RING finger) fa...    27   8.1  

>At5g66840.1 68418.m08427 SAP domain-containing protein contains
           Pfam domain PF02037: SAP domain
          Length = 551

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 23/67 (34%), Positives = 34/67 (50%)
 Frame = +3

Query: 423 PDTPPKTLSAWTHSENQAGTSADYRQYHENYNYNMQQNQSGTRNGNYDSPKPPVPAKTYG 602
           P+ PP    ++T+SE Q  T+   R    +Y Y+ QQNQ+  R        PP  + TY 
Sbjct: 373 PNIPP--YHSYTYSEQQNQTNQ--RPPPASYTYSTQQNQTNQR--------PPPASYTYP 420

Query: 603 TKIDATN 623
           T+ + TN
Sbjct: 421 TQQNQTN 427


>At5g09610.1 68418.m01112 pumilio/Puf RNA-binding domain-containing
           protein contains Pfam profile: PF00806: Pumilio-family
           RNA binding domains (aka PUM-HD, Pumilio homology
           domain)
          Length = 517

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/52 (28%), Positives = 28/52 (53%)
 Frame = +3

Query: 480 TSADYRQYHENYNYNMQQNQSGTRNGNYDSPKPPVPAKTYGTKIDATNNSQQ 635
           T+ +  + + NYN+  +  +SGT N N ++P PP+       ++ A  N Q+
Sbjct: 95  TAFNNLELYANYNHQ-EPGESGTTNINNNNPNPPLLTAFDNLRLYANYNHQE 145


>At3g02810.1 68416.m00273 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 558

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = +3

Query: 462 SENQAGTSADYRQYHENYNYNMQQNQSGTRNGNYDSPKPPVPAKTYGTKIDATNNSQQIT 641
           SE ++ +  +Y++ HE  + +M+ +     N  ++  +PP P       ID  N +Q + 
Sbjct: 402 SEKESVSKNEYKKKHEEEDSSMESDDESDSNSEHEKDQPPKP-------IDEKNQAQSLK 454

Query: 642 V 644
           +
Sbjct: 455 I 455


>At4g15960.1 68417.m02423 epoxide hydrolase, putative similar to
           epoxide hydrolase [Solanum tuberosum] GI:407944;
           contains Pfam profile PF00561: hydrolase, alpha/beta
           fold family
          Length = 375

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/21 (61%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = +1

Query: 364 IPKCQYFKRLENAADSAP-WL 423
           +PK +YFKR ENAA + P WL
Sbjct: 244 LPKDKYFKRSENAASALPLWL 264


>At5g51300.2 68418.m06360 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 414 AVAPDTPPKTLSAWTHSENQAGTSADYRQYHENYNYNMQQNQSGTRNGNYDSPKPPVP 587
           AV P TPP   S+  HS+N          +  N + +   +  G  N  + +P PP+P
Sbjct: 710 AVPPPTPPAPASSTDHSQNMGN-----MPWANNPSVSTPDHSQGLVNAPW-APNPPMP 761


>At5g51300.1 68418.m06359 splicing factor-related contains
           similarity to SF1 protein [Drosophila melanogaster]
           GI:6687400
          Length = 804

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/58 (29%), Positives = 26/58 (44%)
 Frame = +3

Query: 414 AVAPDTPPKTLSAWTHSENQAGTSADYRQYHENYNYNMQQNQSGTRNGNYDSPKPPVP 587
           AV P TPP   S+  HS+N          +  N + +   +  G  N  + +P PP+P
Sbjct: 710 AVPPPTPPAPASSTDHSQNMGN-----MPWANNPSVSTPDHSQGLVNAPW-APNPPMP 761


>At3g20640.1 68416.m02612 ethylene-responsive protein -related
           contains similarity to ethylene-inducible ER33 protein
           [Lycopersicon esculentum] gi|5669656|gb|AAD46413
          Length = 454

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 15/58 (25%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
 Frame = +3

Query: 420 APDTPPKTLSAWTHSENQAGTSADYRQYHENYNYN-MQQNQSGTRNGNYDSPKPPVPA 590
           A  T P + S   H +   G  +  +Q   N+  + +  +Q G+  GNYD     +P+
Sbjct: 185 ATTTTPNSSSGMFHHQQAGGFGSSDQQPSRNHQQSSLGYSQFGSSTGNYDQMASALPS 242


>At5g66070.1 68418.m08324 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 221

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = -1

Query: 378 LALWNSFLLKIISLLVL*EILRSVCAGRQVREALG 274
           L LW S    I  LL L +++ S+ +GR VRE +G
Sbjct: 86  LLLWQSDESGIGCLLYLIDVIASLLSGRLVRERIG 120


>At1g28400.1 68414.m03492 expressed protein similar to E6
           (GI:1000090) [Gossypium barbadense]
          Length = 335

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = +3

Query: 459 HSENQAGTSADYRQYHENYNYNMQQN--QSGTRNGNYDSPKPPVPAKTYGTKID 614
           + EN A    +    + NYNY   +N  +      N D+ K    +  YGT+++
Sbjct: 172 YDENYAKEEFNNNNNNNNYNYKYDENVKEESFPENNEDNKKNVYNSNAYGTELE 225


>At4g35840.1 68417.m05091 zinc finger (C3HC4-type RING finger)
           family protein contains a TG non-consensus donor splice
           site at exon 2; contains Pfam profile PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 236

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -1

Query: 378 LALWNSFLLKIISLLVL*EILRSVCAGRQVREALG 274
           L LW S   +   LL L +++ S+ +GR VRE +G
Sbjct: 96  LVLWKSNESRFGCLLYLIDVIVSLISGRLVRERIG 130


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,925,544
Number of Sequences: 28952
Number of extensions: 314918
Number of successful extensions: 1099
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1096
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)