Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0879
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    32   0.085
SPAC12G12.05c |taf9||transcription initiation factor Taf9|Schizo...    26   5.6  
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    26   5.6  
SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate synthase|Schizos...    26   5.6  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    26   5.6  
SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    26   5.6  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    26   5.6  
SPBC887.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.7  

>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 31.9 bits (69), Expect = 0.085
 Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 7/80 (8%)
 Frame = +1

Query: 64  RNVILIIG*KMFQNTIRHINVLSKRKLPIMSFTRTKAAYEGEGKTTVRVLN--NEYDLGL 237
           RNV++ +G   FQ T++ ++ + +  LPI+ F      Y  E +      N    +D   
Sbjct: 442 RNVVVFVGDGSFQETVQEVSQMVRLNLPIIMFLINNRGYTIEVEIHDGPYNRIKNWDYAA 501

Query: 238 MIDSF-----ATYGFKLNNG 282
           ++++F        GF++ NG
Sbjct: 502 IVEAFNAGEGHAKGFRVGNG 521


>SPAC12G12.05c |taf9||transcription initiation factor
           Taf9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 163

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -2

Query: 263 P*VAKESIISPRSYSLFRTLTVVLPSPSYAALVRVKLIIGSFLFDKTLI 117
           P ++ ESI  P+   L   +   L  PSY+  V ++L+  +  + + LI
Sbjct: 4   PGISDESIKGPKDVRLIHLILSSLGVPSYSQTVPLQLLTFAHRYTQQLI 52


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +1

Query: 43  IFIELTSRNVILIIG*KMFQNTIRHINVLSKRKLPI-MSFTRTKAA 177
           IF  L + N + I G  +F+N +    V  KRK  I  S T+ K+A
Sbjct: 168 IFEALPNDNYLQISGIPLFKNNVFEETVSKKRKRTIETSITQNKSA 213


>SPBC3E7.16c |leu3|SPBC4F6.03c|2-isopropylmalate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 584

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 17/76 (22%), Positives = 28/76 (36%), Gaps = 4/76 (5%)
 Frame = +1

Query: 160 TRTKAAYEGEGK----TTVRVLNNEYDLGLMIDSFATYGFKLNNGITVLGPMAIFPRTVL 327
           T ++   EG G       V  L  ++++   I  ++ +     NG+     + I      
Sbjct: 494 TPSRVVIEGVGNGPLSALVDALRRQFNISFDIGQYSEHAIGSGNGVKAASYVEIIFNNTS 553

Query: 328 SWQVADSDDVTEESLK 375
            W V    DVT   LK
Sbjct: 554 FWGVGIDADVTSAGLK 569


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -3

Query: 553 RICPLRSGS*MWNMRVLLPRF 491
           R+ PLRSGS  WN+  L+ +F
Sbjct: 427 RMSPLRSGSKTWNIFQLVEQF 447


>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +1

Query: 124 VLSKRKLPIMSFTRTKAAYEGEGKTTVRVLNNEYDLGL 237
           V SK ++    +TR K   E +GK  V  L  E DL +
Sbjct: 499 VKSKTEILTQLYTRKKQLLEQQGKGNVACLPKESDLSM 536


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -1

Query: 585 DFERWYQGSSHGSALC 538
           DFE+WY   ++GS +C
Sbjct: 572 DFEKWYTRYANGSPIC 587


>SPBC887.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 124

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +3

Query: 300 YGHISKNGIILASRRF 347
           +GH+SKNG++L    +
Sbjct: 41  FGHLSKNGVVLGEEAY 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,553,180
Number of Sequences: 5004
Number of extensions: 50331
Number of successful extensions: 143
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)