Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0879
(663 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1432 - 33558895-33559023,33559215-33559286,33559405-335594... 31 0.82
04_01_0293 + 3881375-3883698,3906619-3907636,3907820-3908309,391... 31 0.82
05_06_0265 - 26759960-26760088,26760315-26760386,26760457-267605... 30 1.9
04_04_1431 - 33551127-33551300,33551362-33551433,33551508-335515... 29 2.5
01_06_0411 + 29151647-29151790,29152974-29153039,29153398-291535... 29 3.3
07_03_0872 - 22190468-22190575,22190652-22190910,22191005-221911... 29 4.4
12_02_0230 + 15973390-15974645,16002878-16003097 28 7.6
10_05_0026 + 8262237-8262899,8263300-8263509,8263599-8265480,826... 28 7.6
09_01_0103 - 1628763-1628879,1641827-1642921,1645126-1645476,164... 28 7.6
08_01_0441 + 3890231-3890845,3891253-3894220,3906625-3906713,390... 28 7.6
07_03_1512 + 27288779-27289222,27298101-27298399,27298499-272985... 28 7.6
>04_04_1432 -
33558895-33559023,33559215-33559286,33559405-33559494,
33559574-33559618,33559693-33559788,33559905-33559956,
33560044-33560132,33560226-33560342,33560448-33560534,
33560646-33560761,33560854-33560878,33561816-33562121
Length = 407
Score = 31.1 bits (67), Expect = 0.82
Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +3
Query: 90 KNVSKYN-KAYQRFIKKKTSYYEFY 161
K++++Y + Y+R +K KTSYY FY
Sbjct: 238 KDLARYRIQGYRRIVKYKTSYYSFY 262
>04_01_0293 +
3881375-3883698,3906619-3907636,3907820-3908309,
3914729-3914823,3914854-3915213
Length = 1428
Score = 31.1 bits (67), Expect = 0.82
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 574 PFKVNMNEDDMLEVKMHYSDIFQKGFSKPS 663
P+++ NE + EVK H D+ QKG+ +PS
Sbjct: 538 PYRMAANE--LAEVKRHVDDLLQKGYIRPS 565
>05_06_0265 -
26759960-26760088,26760315-26760386,26760457-26760546,
26760649-26760693,26760785-26760880,26760980-26761031,
26761209-26761297,26761388-26761504,26761680-26761737,
26761834-26761936,26762027-26762051,26762677-26762826
Length = 341
Score = 29.9 bits (64), Expect = 1.9
Identities = 12/25 (48%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +3
Query: 90 KNVSKYN-KAYQRFIKKKTSYYEFY 161
K+++KYN ++R ++ KTSYY FY
Sbjct: 172 KDLNKYNIGVHRRIVQYKTSYYSFY 196
>04_04_1431 -
33551127-33551300,33551362-33551433,33551508-33551597,
33551671-33551715,33551785-33551880,33552245-33552296,
33552412-33552500,33552590-33552887,33553007-33553109,
33553328-33553352,33553503-33553763
Length = 434
Score = 29.5 bits (63), Expect = 2.5
Identities = 11/24 (45%), Positives = 19/24 (79%), Gaps = 1/24 (4%)
Frame = +3
Query: 93 NVSKYN-KAYQRFIKKKTSYYEFY 161
+++KY+ + Y+R +K KT+YY FY
Sbjct: 251 DLAKYSIEGYRRIVKYKTAYYSFY 274
>01_06_0411 +
29151647-29151790,29152974-29153039,29153398-29153538,
29153638-29153724,29153968-29154084,29154177-29154265,
29154510-29154561,29154667-29154762,29154835-29154879,
29155002-29155091,29155164-29155235,29155490-29155618
Length = 375
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/25 (44%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +3
Query: 90 KNVSKYN-KAYQRFIKKKTSYYEFY 161
K+++KYN ++R ++ KT+YY FY
Sbjct: 206 KDLTKYNLTVHRRIVQYKTAYYSFY 230
>07_03_0872 -
22190468-22190575,22190652-22190910,22191005-22191108,
22191245-22191423,22191565-22191670,22191797-22191940,
22192024-22192179,22192274-22192378,22192483-22192545,
22192993-22192995
Length = 408
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/16 (81%), Positives = 13/16 (81%)
Frame = +1
Query: 139 KLPIMSFTRTKAAYEG 186
KLPIM F RTKAA EG
Sbjct: 216 KLPIMKFYRTKAASEG 231
>12_02_0230 + 15973390-15974645,16002878-16003097
Length = 491
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 574 PFKVNMNEDDMLEVKMHYSDIFQKGFSKPS 663
P+++ NE + EVK D+ QKG+ +PS
Sbjct: 311 PYRMAANE--LAEVKRQVDDLLQKGYIRPS 338
>10_05_0026 +
8262237-8262899,8263300-8263509,8263599-8265480,
8265508-8265704,8275672-8275824
Length = 1034
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 574 PFKVNMNEDDMLEVKMHYSDIFQKGFSKPS 663
P+++ NE + EVK D+ QKG+ +PS
Sbjct: 737 PYRMAANE--LAEVKRQVDDLLQKGYIRPS 764
>09_01_0103 -
1628763-1628879,1641827-1642921,1645126-1645476,
1645567-1645734
Length = 576
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 574 PFKVNMNEDDMLEVKMHYSDIFQKGFSKPS 663
P+++ NE + EVK D+ QKG+ +PS
Sbjct: 227 PYRMATNE--LAEVKRQVDDLLQKGYIRPS 254
>08_01_0441 +
3890231-3890845,3891253-3894220,3906625-3906713,
3908317-3908337
Length = 1230
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 574 PFKVNMNEDDMLEVKMHYSDIFQKGFSKPS 663
P+++ NE + EVK D+ QKG+ +PS
Sbjct: 759 PYRMAANE--LAEVKRQVDDLLQKGYIRPS 786
>07_03_1512 +
27288779-27289222,27298101-27298399,27298499-27298589,
27298701-27298766,27299151-27302660,27311604-27312224
Length = 1676
Score = 27.9 bits (59), Expect = 7.6
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +1
Query: 574 PFKVNMNEDDMLEVKMHYSDIFQKGFSKPS 663
P+++ NE + EVK D+ QKG+ +PS
Sbjct: 845 PYRMAANE--LAEVKRQVDDLLQKGYIRPS 872
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,054,964
Number of Sequences: 37544
Number of extensions: 314668
Number of successful extensions: 761
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 749
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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