Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0879
         (663 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.21 
SB_53596| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-21)          30   1.9  
SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05)                 29   4.5  
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.5  
SB_18300| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_24062| Best HMM Match : Drf_FH1 (HMM E-Value=0.45)                  28   7.8  

>SB_53949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1149

 Score = 33.1 bits (72), Expect = 0.21
 Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 273 KQRHHSFRTYGHISKNGIILASRRFG*R-HRGVPEAVQTARA 395
           +QRHH F+ Y  I KN I++ +     +   GVP+A+ T  A
Sbjct: 583 QQRHHGFQVYEEIEKNLILIGATAIEDKLQDGVPDAIATLAA 624


>SB_53596| Best HMM Match : F5_F8_type_C (HMM E-Value=1.3e-21)
          Length = 472

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/46 (41%), Positives = 28/46 (60%)
 Frame = -2

Query: 206 LTVVLPSPSYAALVRVKLIIGSFLFDKTLICLIVF*NIFQPIIRMT 69
           LTVVL S     L+R+ +++GS +F + +ICL+V     QP I  T
Sbjct: 116 LTVVLGSIFSQPLIRLTVVLGS-IFSQPVICLLVV--TEQPAIHYT 158


>SB_35419| Best HMM Match : SMC_C (HMM E-Value=1.9e-05)
          Length = 867

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 72  HSYNRLKNVSKYNKAYQRFIKKKTSYYEFY 161
           H  + LKN+ ++NK     +KK+T  Y+ Y
Sbjct: 680 HIKDSLKNLRRFNKRLTNMMKKRTQAYQDY 709


>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2396

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 344  SATCQDNTVLGNMAIGPKTVMPLFNLKP*VAKES 243
            S  CQ+ T+  N+ +GP   M L  LK  VAK S
Sbjct: 1351 SVPCQEYTIRANLDLGPVNQMDLAALKRDVAKLS 1384


>SB_18300| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 365

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +3

Query: 399 NRSAYLRLGYD-GSFENRQSIQGGPRERIEHRNLGNRTRMFHIQLPERRGQIRGCCPDTT 575
           NRS+Y R     G+F +R ++  G     E     +R  +    L ERR + R C  D +
Sbjct: 252 NRSSYSRENVSRGAFASRDNLSKGLYSSKERHIYSSRDGVEKGHLKERRARRRACAKDRS 311

Query: 576 VQ 581
            +
Sbjct: 312 AR 313


>SB_24062| Best HMM Match : Drf_FH1 (HMM E-Value=0.45)
          Length = 1032

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 561 SSHGSALCVQEVECGTCVFCCQDFDVQFVR 472
           +SH   + + E +C  C+FC + F  +  R
Sbjct: 482 TSHKEGITISEKKCHACLFCGKSFTCKMAR 511


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,936,119
Number of Sequences: 59808
Number of extensions: 377070
Number of successful extensions: 949
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 949
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)