Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0879
         (663 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY119235-1|AAM51095.1|  196|Drosophila melanogaster SD18780p pro...   148   6e-36
AE013599-3709|AAF47082.1|  196|Drosophila melanogaster CG5569-PA...   148   6e-36
AE014296-2334|AAO41253.1|  653|Drosophila melanogaster CG17364-P...    31   1.8  
AE014296-2333|AAF49781.3|  804|Drosophila melanogaster CG17364-P...    31   1.8  
AY094951-1|AAM11304.1|  394|Drosophila melanogaster RH68811p pro...    30   2.4  

>AY119235-1|AAM51095.1|  196|Drosophila melanogaster SD18780p
           protein.
          Length = 196

 Score =  148 bits (359), Expect = 6e-36
 Identities = 67/158 (42%), Positives = 103/158 (65%), Gaps = 2/158 (1%)
 Frame = +1

Query: 175 AYEGEGKTTVRVLNNEYDLGLMIDSFATYGFKLNNGITVLGPMAIFPRTVLSWQVADSDD 354
           AY+ +GKT V + N E DLGLM+  ++ YGF+LNN + ++GP+++FPR+VLSW V   +D
Sbjct: 37  AYDHDGKTKVTIFNTETDLGLMVTGYSQYGFRLNNDMVLIGPISVFPRSVLSWNVNSFED 96

Query: 355 VTEESLKLFKLLEPR--XXXXXXXXXXXXRSKIDKAFKAARANELNIEILATEHACSTFN 528
           + E+SL LF  LEP+               +   +  +  +  ++N+EIL TE AC+TFN
Sbjct: 97  INEDSLSLFPTLEPKIDVLIIGIGDQAPPPALSKRIIEFMKKYKINVEILRTEQACATFN 156

Query: 529 FLNAEGRSVAAALIPPFKVNMNEDDMLEVKMHYSDIFQ 642
           FLNAE R VA ALIPP  ++ NE+D+L+ K+   ++++
Sbjct: 157 FLNAENRMVACALIPPLHLSYNENDILQAKLRKKELYE 194


>AE013599-3709|AAF47082.1|  196|Drosophila melanogaster CG5569-PA
           protein.
          Length = 196

 Score =  148 bits (359), Expect = 6e-36
 Identities = 67/158 (42%), Positives = 103/158 (65%), Gaps = 2/158 (1%)
 Frame = +1

Query: 175 AYEGEGKTTVRVLNNEYDLGLMIDSFATYGFKLNNGITVLGPMAIFPRTVLSWQVADSDD 354
           AY+ +GKT V + N E DLGLM+  ++ YGF+LNN + ++GP+++FPR+VLSW V   +D
Sbjct: 37  AYDHDGKTKVTIFNTETDLGLMVTGYSQYGFRLNNDMVLIGPISVFPRSVLSWNVNSFED 96

Query: 355 VTEESLKLFKLLEPR--XXXXXXXXXXXXRSKIDKAFKAARANELNIEILATEHACSTFN 528
           + E+SL LF  LEP+               +   +  +  +  ++N+EIL TE AC+TFN
Sbjct: 97  INEDSLSLFPTLEPKIDVLIIGIGDQAPPPALSKRIIEFMKKYKINVEILRTEQACATFN 156

Query: 529 FLNAEGRSVAAALIPPFKVNMNEDDMLEVKMHYSDIFQ 642
           FLNAE R VA ALIPP  ++ NE+D+L+ K+   ++++
Sbjct: 157 FLNAENRMVACALIPPLHLSYNENDILQAKLRKKELYE 194


>AE014296-2334|AAO41253.1|  653|Drosophila melanogaster CG17364-PB,
           isoform B protein.
          Length = 653

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +3

Query: 246 LFCY-LWLQVKQRHHSFRTYGHISKNGIILASRRFG*RHRGVPEAVQTARA*NRSAYLRL 422
           L C  L L  K ++   R YG  S    IL S        G+P  V +AR  +RS+    
Sbjct: 257 LICMVLHLFSKTKYPRHRNYGDASIPPPILYSS-----DTGIPLTVHSARPSSRSSIRST 311

Query: 423 GYDGSFENRQSIQGG 467
           G  GS+ NR++  GG
Sbjct: 312 GSIGSYGNRRASAGG 326


>AE014296-2333|AAF49781.3|  804|Drosophila melanogaster CG17364-PA,
           isoform A protein.
          Length = 804

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
 Frame = +3

Query: 246 LFCY-LWLQVKQRHHSFRTYGHISKNGIILASRRFG*RHRGVPEAVQTARA*NRSAYLRL 422
           L C  L L  K ++   R YG  S    IL S        G+P  V +AR  +RS+    
Sbjct: 257 LICMVLHLFSKTKYPRHRNYGDASIPPPILYSS-----DTGIPLTVHSARPSSRSSIRST 311

Query: 423 GYDGSFENRQSIQGG 467
           G  GS+ NR++  GG
Sbjct: 312 GSIGSYGNRRASAGG 326


>AY094951-1|AAM11304.1|  394|Drosophila melanogaster RH68811p
           protein.
          Length = 394

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 24/70 (34%), Positives = 33/70 (47%)
 Frame = +3

Query: 258 LWLQVKQRHHSFRTYGHISKNGIILASRRFG*RHRGVPEAVQTARA*NRSAYLRLGYDGS 437
           L L  K ++   R YG  S    IL S        G+P  V +AR  +RS+    G  GS
Sbjct: 3   LHLFSKTKYPRHRNYGDASIPPPILYSS-----DTGIPLTVHSARPSSRSSIRSTGSIGS 57

Query: 438 FENRQSIQGG 467
           + NR++  GG
Sbjct: 58  YGNRRASAGG 67


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,996,240
Number of Sequences: 53049
Number of extensions: 537011
Number of successful extensions: 1207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1205
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2848092300
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)