Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0879
         (663 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81107-3|CAE45743.1|  295|Caenorhabditis elegans Hypothetical pr...    93   1e-19
Z81107-2|CAB03226.2|  270|Caenorhabditis elegans Hypothetical pr...    93   1e-19

>Z81107-3|CAE45743.1|  295|Caenorhabditis elegans Hypothetical
           protein R07H5.3b protein.
          Length = 295

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 4/116 (3%)
 Frame = +1

Query: 241 IDSFATYGFKLNNGITVLGPMAIFPRTVLSWQVADSDDVTEESLKLFKLLEPRXXXXXXX 420
           +   + YGF+L +G  + GP+A+FP+T LSW+V   +D+T  SL LF  LEP+       
Sbjct: 97  VRGLSCYGFRLLDGTFLYGPIALFPKTALSWRVPTPEDITPRSLALFAALEPK--IDILV 154

Query: 421 XXXXXRSKIDKAFKAA----RANELNIEILATEHACSTFNFLNAEGRSVAAALIPP 576
                +  IDK   +     R +++ +EI+ TE A +TFNFLNAEGR V AAL PP
Sbjct: 155 LGVGDKKNIDKVRASVAPFLREHKIGLEIMDTEDAIATFNFLNAEGRYVGAALYPP 210


>Z81107-2|CAB03226.2|  270|Caenorhabditis elegans Hypothetical
           protein R07H5.3a protein.
          Length = 270

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 49/116 (42%), Positives = 69/116 (59%), Gaps = 4/116 (3%)
 Frame = +1

Query: 241 IDSFATYGFKLNNGITVLGPMAIFPRTVLSWQVADSDDVTEESLKLFKLLEPRXXXXXXX 420
           +   + YGF+L +G  + GP+A+FP+T LSW+V   +D+T  SL LF  LEP+       
Sbjct: 72  VRGLSCYGFRLLDGTFLYGPIALFPKTALSWRVPTPEDITPRSLALFAALEPK--IDILV 129

Query: 421 XXXXXRSKIDKAFKAA----RANELNIEILATEHACSTFNFLNAEGRSVAAALIPP 576
                +  IDK   +     R +++ +EI+ TE A +TFNFLNAEGR V AAL PP
Sbjct: 130 LGVGDKKNIDKVRASVAPFLREHKIGLEIMDTEDAIATFNFLNAEGRYVGAALYPP 185


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,064,991
Number of Sequences: 27780
Number of extensions: 283473
Number of successful extensions: 649
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 647
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)