Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0879
         (663 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44525.1 68415.m05537 expressed protein                             52   3e-07
At3g60150.1 68416.m06716 hypothetical protein low similarity to ...    51   8e-07
At4g17190.2 68417.m02585 farnesyl pyrophosphate synthetase 2 (FP...    29   3.6  
At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FP...    29   3.6  
At5g10490.1 68418.m01215 mechanosensitive ion channel domain-con...    28   6.4  

>At2g44525.1 68415.m05537 expressed protein
          Length = 170

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 30/124 (24%), Positives = 57/124 (45%)
 Frame = +1

Query: 202 VRVLNNEYDLGLMIDSFATYGFKLNNGITVLGPMAIFPRTVLSWQVADSDDVTEESLKLF 381
           + +++N  +  L    F    F +N G+   G +      ++SW      ++T +SL +F
Sbjct: 43  INLIDNVPEDQLRFQEFNDTSFTVN-GVKYEGSLLCVGNLLMSWSPRKFSEITTDSLSIF 101

Query: 382 KLLEPRXXXXXXXXXXXXRSKIDKAFKAARANELNIEILATEHACSTFNFLNAEGRSVAA 561
           + + P                  +  +  ++  + +E + + +A ST+N LN EGR VAA
Sbjct: 102 QTVRPIPELLIVGCGRDIHPVTPEVRQFVKSLGMKLETVDSRNAASTYNILNEEGRVVAA 161

Query: 562 ALIP 573
           AL+P
Sbjct: 162 ALLP 165


>At3g60150.1 68416.m06716 hypothetical protein low similarity to 2P1
           protein [Mus musculus] GI:7385170; contains Pfam profile
           PF04635: Protein of unknown function, DUF598
          Length = 170

 Score = 50.8 bits (116), Expect = 8e-07
 Identities = 27/99 (27%), Positives = 47/99 (47%)
 Frame = +1

Query: 277 NGITVLGPMAIFPRTVLSWQVADSDDVTEESLKLFKLLEPRXXXXXXXXXXXXRSKIDKA 456
           NG+   G +      ++SW      D+T +SL +F+ + P                  + 
Sbjct: 67  NGVKYEGSLLCVGNLLMSWSPRYFSDITTDSLSIFQTVRPIPELLIVGCGRYNHPLNPQV 126

Query: 457 FKAARANELNIEILATEHACSTFNFLNAEGRSVAAALIP 573
            +  ++  + +E + + +A ST+N LN EGR VAAAL+P
Sbjct: 127 RQFVKSIGMKLETVDSRNAASTYNILNEEGRIVAAALLP 165


>At4g17190.2 68417.m02585 farnesyl pyrophosphate synthetase 2 (FPS2)
           / FPP synthetase 2 / farnesyl diphosphate synthase 2
           identical to SP|Q43315 Farnesyl pyrophosphate synthetase
           2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate
           synthetase 2) [Includes: Dimethylallyltransferase (EC
           2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]
           {Arabidopsis thaliana}
          Length = 247

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/25 (44%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
 Frame = +3

Query: 90  KNVSKYN-KAYQRFIKKKTSYYEFY 161
           K++SKY+ + ++R ++ KT+YY FY
Sbjct: 78  KDLSKYSLQIHRRIVEYKTAYYSFY 102


>At4g17190.1 68417.m02586 farnesyl pyrophosphate synthetase 2 (FPS2)
           / FPP synthetase 2 / farnesyl diphosphate synthase 2
           identical to SP|Q43315 Farnesyl pyrophosphate synthetase
           2 (FPP synthetase 2) (FPS 2) (Farnesyl diphosphate
           synthetase 2) [Includes: Dimethylallyltransferase (EC
           2.5.1.1); Geranyltranstransferase (EC 2.5.1.10)]
           {Arabidopsis thaliana}
          Length = 342

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/25 (44%), Positives = 20/25 (80%), Gaps = 1/25 (4%)
 Frame = +3

Query: 90  KNVSKYN-KAYQRFIKKKTSYYEFY 161
           K++SKY+ + ++R ++ KT+YY FY
Sbjct: 173 KDLSKYSLQIHRRIVEYKTAYYSFY 197


>At5g10490.1 68418.m01215 mechanosensitive ion channel
           domain-containing protein / MS ion channel
           domain-containing protein contains Pfam profile PF00924:
           Mechanosensitive ion channel
          Length = 519

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 368 DSSVTSSESATCQDNTVLGNMAIGPKTVMPL 276
           DSS +S+  +T ++N VLG    G K  +P+
Sbjct: 440 DSSTSSASRSTLEENIVLGVALEGSKRTLPI 470


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,123,070
Number of Sequences: 28952
Number of extensions: 257914
Number of successful extensions: 646
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)