Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0877
(603 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 129 4e-31
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 68 9e-13
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 59 6e-10
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 48 1e-06
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 43 4e-05
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 41 2e-04
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 40 3e-04
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 38 0.001
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 38 0.001
SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|c... 37 0.003
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 36 0.006
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 36 0.006
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 33 0.024
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 27 2.1
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 27 2.1
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 3.7
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 4.9
SPAC23A1.03 |apt1||adenine phosphoribosyltransferase |Schizosacc... 25 6.4
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 6.4
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 25 8.5
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 129 bits (311), Expect = 4e-31
Identities = 67/130 (51%), Positives = 86/130 (66%), Gaps = 1/130 (0%)
Frame = +1
Query: 217 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQG 393
F DF+ GG+SAAVSKTA APIERVKLL+Q Q + + RYKGI + F R E+G
Sbjct: 27 FFFDFMMGGVSAAVSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEG 86
Query: 394 LLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXT 573
++S WRGN ANV+RYFPTQALNFAFKDK+K++F G ++ + ++F
Sbjct: 87 VISLWRGNTANVLRYFPTQALNFAFKDKFKKMF-GYKKERDGYAKWFAGNLASGGAAGAA 145
Query: 574 SLCFVYPLDF 603
SL FVY LD+
Sbjct: 146 SLLFVYSLDY 155
Score = 39.1 bits (87), Expect = 5e-04
Identities = 24/95 (25%), Positives = 43/95 (45%)
Frame = +1
Query: 217 FAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGL 396
FA + +GG + A S V ++ + L S + ++++ G+VD + + + GL
Sbjct: 132 FAGNLASGGAAGAASLLFVYSLDYARTRLANDAKSAKKGGERQFNGLVDVYRKTYRSDGL 191
Query: 397 LSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGG 501
+RG +V+ + L F D K V L G
Sbjct: 192 RGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVLVG 226
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 68.1 bits (159), Expect = 9e-13
Identities = 34/85 (40%), Positives = 54/85 (63%)
Frame = +1
Query: 232 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 411
L+GG++A VS+TAV+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+R
Sbjct: 25 LSGGVAATVSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFR 77
Query: 412 GNFANVIRYFPTQALNFAFKDKYKQ 486
GN N +R FP A+ FA + KQ
Sbjct: 78 GNGTNCLRAFPYGAVQFATFNMLKQ 102
Score = 43.6 bits (98), Expect = 2e-05
Identities = 26/92 (28%), Positives = 44/92 (47%)
Frame = +1
Query: 187 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDA 366
K + AD AF K FL GG + + +T P + ++ QV + YK I A
Sbjct: 217 KFFSNADLTAFQKLFL-GGFTGIIGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSA 272
Query: 367 FVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 462
I K +G+ F+RG +N+++ P ++ +
Sbjct: 273 IFHIYKTEGINGFFRGYSSNMLKIIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 58.8 bits (136), Expect = 6e-10
Identities = 37/126 (29%), Positives = 62/126 (49%)
Frame = +1
Query: 223 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLS 402
K +AGG + V+K+ VAP++RVK+L Q H S + A R+ G+ A I GL
Sbjct: 19 KSGIAGGTAGCVAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHG 77
Query: 403 FWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYFXXXXXXXXXXXXTSLC 582
++G+ A + R FP + F ++ ++V + + +T R+ S+
Sbjct: 78 LYQGHTATLYRVFPYAGIKFVAYEQVRRVLIRDPEHETHARRFL-----SGSLAGTCSVF 132
Query: 583 FVYPLD 600
F YPL+
Sbjct: 133 FTYPLE 138
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 47.6 bits (108), Expect = 1e-06
Identities = 25/95 (26%), Positives = 49/95 (51%)
Frame = +1
Query: 205 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPK 384
DP F++GGI+ VS+T AP++R+K++L + + + + ++ +
Sbjct: 123 DPKNNVGYFISGGIAGIVSRTCTAPLDRLKVML-ISDTGSKPSPKYPFATLLHTTKVLWN 181
Query: 385 EQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQV 489
G+ SF+ GN NV++ P ++ F + K+V
Sbjct: 182 RNGIRSFFVGNGINVLKVMPESSIKFGTYEAMKRV 216
Score = 41.9 bits (94), Expect = 7e-05
Identities = 21/83 (25%), Positives = 40/83 (48%)
Frame = +1
Query: 238 GGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGN 417
G +S + T V P+ ++ LQ Q S A Y G +D F + K +G ++G
Sbjct: 342 GALSGSTGATIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGL 398
Query: 418 FANVIRYFPTQALNFAFKDKYKQ 486
N+++ P+ A+++ + K+
Sbjct: 399 SPNLLKVAPSVAISYLVYENCKK 421
Score = 38.3 bits (85), Expect = 9e-04
Identities = 21/91 (23%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Frame = +1
Query: 229 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSF 405
+LAGG++ +V++ + P++ +K +Q +S+ Q K I+ + + + K G+ +
Sbjct: 232 YLAGGMAGSVAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGY 287
Query: 406 WRGNFANVIRYFPTQALNFAFKDKYKQVFLG 498
+RG ++ FP A + + K+ ++G
Sbjct: 288 YRGVLVGILGMFPYSATDLGTFEGLKRTWIG 318
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 42.7 bits (96), Expect = 4e-05
Identities = 27/96 (28%), Positives = 52/96 (54%)
Frame = +1
Query: 232 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 411
++GG+S A++ + P++ VK LLQ + S I ++ KG +D I G+ SF++
Sbjct: 209 ISGGLSGAIASSLTTPLDVVKTLLQTRG-SSSIPEVRKCKGSLDVVRFIYNYGGIPSFFK 267
Query: 412 GNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQ 519
G ++ P A+++A + K++ + V K +Q
Sbjct: 268 GIRPRMVVAMPATAVSWAAYEAGKEILI-RVSKTSQ 302
Score = 39.9 bits (89), Expect = 3e-04
Identities = 22/94 (23%), Positives = 50/94 (53%), Gaps = 1/94 (1%)
Frame = +1
Query: 232 LAGGISAAVSKTAVAPIERVKLLLQVQH-VSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 408
LAG S + + + P++ +K +Q+ + VS+ ++ + IV++ ++I +G+ S W
Sbjct: 24 LAGAFSGILEHSVMYPVDAIKTRMQMLNGVSRSVSGN-----IVNSVIKISSTEGVYSLW 78
Query: 409 RGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDK 510
RG + ++ P+ A+ F+ + +K D+
Sbjct: 79 RGISSVIMGAGPSHAIYFSVLEFFKSKINASPDR 112
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 40.7 bits (91), Expect = 2e-04
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Frame = +1
Query: 223 KDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQR---YKGIVDAFVRIPKEQG 393
KD +AGG + S VAP++ VK Q Q + G + + I +G
Sbjct: 7 KDAIAGGAAGLASSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEG 66
Query: 394 LLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKK 513
+ +RG ++ Y P+ ++ F +K K +F GV+KK
Sbjct: 67 IAGLYRGVGPMMLGYLPSWSIYFVVYEKCKVLF--GVNKK 104
Score = 29.5 bits (63), Expect = 0.40
Identities = 18/64 (28%), Positives = 28/64 (43%)
Frame = +1
Query: 331 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDK 510
A Y DAF +I K +GL +F+RG F ++ + F + +K K
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSLFGTLHV-GIQFPLYEYFKSFLDDFFGK 283
Query: 511 KTQF 522
K+ F
Sbjct: 284 KSNF 287
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 39.9 bits (89), Expect = 3e-04
Identities = 26/96 (27%), Positives = 43/96 (44%)
Frame = +1
Query: 205 DPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPK 384
D + F F AG ++ + P++ VK +Q+ V K Y G D +I K
Sbjct: 4 DNIPFPVTFAAGAVAGISEVLTLYPLDVVKTRMQLS-VGKS-----DYNGTFDCLKKIVK 57
Query: 385 EQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVF 492
+G +RG ++ P +AL FA D Y +++
Sbjct: 58 NEGPHRLYRGILPPILMEAPKRALKFASNDTYSKLW 93
Score = 34.3 bits (75), Expect = 0.014
Identities = 26/89 (29%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Frame = +1
Query: 220 AKDFLAGGISAAVSKTAVAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGL 396
A L G + V P E +K+ LQ V++ SK Y G VD F +I K++ +
Sbjct: 105 ALSILTGSCAGFTETFVVVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERI 157
Query: 397 LSFWRGNFANVIRYFPTQALNFAFKDKYK 483
L+ + G A + R+ A F K +
Sbjct: 158 LALYNGFEATMWRHVVWNAGYFGVIQKIR 186
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 37.9 bits (84), Expect = 0.001
Identities = 25/68 (36%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Frame = +1
Query: 214 AFAKDFLAGGISAAVSKTAVA-PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQ 390
+F KDFLA G+S V++ V P + VK+ LQ Q I Y +D +I K +
Sbjct: 16 SFTKDFLA-GVSGGVAQVLVGQPFDCVKVRLQSQSNVSPI-----YNNALDCVKKISKNE 69
Query: 391 GLLSFWRG 414
GL +F++G
Sbjct: 70 GLAAFYKG 77
Score = 34.7 bits (76), Expect = 0.011
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +1
Query: 208 PVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKE 387
PV + +++G IS + V P+E V++ LQ+Q K + Y G D +I +
Sbjct: 109 PVTMPQYYVSGAISGLANSFLVGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQ 163
Query: 388 QGLLSFWRG 414
GL +G
Sbjct: 164 YGLSGIMKG 172
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 37.9 bits (84), Expect = 0.001
Identities = 21/87 (24%), Positives = 39/87 (44%)
Frame = +1
Query: 229 FLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFW 408
FL G ++ ++ PI+ VK +Q ++A + YK + +I + GLL FW
Sbjct: 207 FLVGSVAGIITVYCTQPIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFW 260
Query: 409 RGNFANVIRYFPTQALNFAFKDKYKQV 489
G + R + + F +K ++
Sbjct: 261 SGATPRLARLILSGGIVFTVYEKVMEI 287
>SPAC139.02c |oac1||anion transporter|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 36.7 bits (81), Expect = 0.003
Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 229 FLAGGISAAVSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 405
FL+GG++A + T P E +K Q+Q ++K + + YK + AF I + +G+
Sbjct: 27 FLSGGLAACGAVTLTNPFEVIKTRFQLQGQLTKLDPSKRIYKSVGQAFSLIARHEGIRGL 86
Query: 406 WRG 414
RG
Sbjct: 87 QRG 89
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 35.5 bits (78), Expect = 0.006
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 12/111 (10%)
Frame = +1
Query: 166 VKIT*SNKMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVS----KQIA 333
V +T +N SN P + F+AGG++ + A AP++ VK LQ KQ A
Sbjct: 32 VLLTKANNASNERAPPPLSH-FIAGGVAGMLGAIATAPLDVVKTRLQSDFYKDRFLKQTA 90
Query: 334 ADQ-----RYKGIVDAFV---RIPKEQGLLSFWRGNFANVIRYFPTQALNF 462
+ Y+ +D + + +G + +RG N+I P +++NF
Sbjct: 91 KSKSPLTAAYRHFMDTCIILKNVKVHEGTRALFRGLGPNLIGTIPARSINF 141
Score = 30.3 bits (65), Expect = 0.23
Identities = 19/74 (25%), Positives = 35/74 (47%)
Frame = +1
Query: 241 GISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNF 420
GI+ ++ P E V+ L+ S I +Y G++ F + EQG++ + G
Sbjct: 280 GIAKFMAAGIAYPHEVVRTRLRQ---SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLT 336
Query: 421 ANVIRYFPTQALNF 462
A+++R P + F
Sbjct: 337 AHLLRVVPNACILF 350
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 35.5 bits (78), Expect = 0.006
Identities = 22/86 (25%), Positives = 39/86 (45%)
Frame = +1
Query: 232 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 411
LAGGIS+ + + +AP + +K+ +Q+ S + F +++G+ + WR
Sbjct: 21 LAGGISSVICRFMIAPFDVIKIRMQITQSS-----------LRPVFKETVQKEGVRALWR 69
Query: 412 GNFANVIRYFPTQALNFAFKDKYKQV 489
GN + Y A F K K +
Sbjct: 70 GNVVAELLYLVYGAAEFVAFSKLKHL 95
Score = 28.7 bits (61), Expect = 0.69
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +1
Query: 232 LAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWR 411
L+G I+ A SK + P++ V LQ YK D F+ I + G+ +R
Sbjct: 197 LSGVIAGAGSKAIMFPVDTVVKTLQT--------FPSNYKSFKDCFLSIYRNSGIKGLYR 248
Query: 412 GNFANVIRYFP 444
G ++++ P
Sbjct: 249 GLSVSMLKVAP 259
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 33.5 bits (73), Expect = 0.024
Identities = 28/104 (26%), Positives = 39/104 (37%), Gaps = 6/104 (5%)
Frame = +1
Query: 223 KDFLAGGISAAVSKT--AVAPIERVKLLLQVQHVSK-QIAADQRYKGIVDAFVRIPKEQG 393
KD L GG + V K P + +QV K + A K + D + G
Sbjct: 167 KDHLVGGCADGVIKVWDLSTPNSAIISRMQVDRARKGEAALIWAVKSLRDGTIVSADSSG 226
Query: 394 LLSFWRGNFANVIRYFP---TQALNFAFKDKYKQVFLGGVDKKT 516
+ FW G F + + F AL VF G+D+KT
Sbjct: 227 AVKFWNGKFFTLSQSFKLHLADALCLGVSANGDMVFSSGIDRKT 270
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 2.1
Identities = 21/91 (23%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
Frame = +1
Query: 232 LAGGISAAVSKTAVAPIERVKLLLQV--QHVSKQIAADQRYKGIVDAFVRIPKEQGLLSF 405
+AG + +S T V+PIE + +Q H A + + + D + ++G+L+
Sbjct: 141 IAGASARTISATIVSPIELFRTRVQAVGGHYPPGHAREIANE-VFDGLKLMIHQKGILNL 199
Query: 406 WRGNFANVIRYFPTQALNFAFKDKYKQVFLG 498
W G + R P A + ++ + LG
Sbjct: 200 WSGVSVTLWRDVPFSAFYWWSYERIRLFLLG 230
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 27.1 bits (57), Expect = 2.1
Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 2/114 (1%)
Frame = +1
Query: 187 KMSNLADPVAFAKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDA 366
K L P + L G ++ + +A+ P++ +K QV Y G +
Sbjct: 13 KTLQLYTPQYYGLCTLGGLLACGTTHSAITPLDLIKCRKQVN--------PNIYPGNIAG 64
Query: 367 FVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD--KYKQVFLGGVDKKTQF 522
F I ++GL + G +I Y + F + K+K L G K ++
Sbjct: 65 FKTILSKEGLRGLYTGGMPTLIGYSLQGCGKYGFYELFKHKYSTLVGAQKAHEY 118
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 3.7
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +3
Query: 66 YEITPNLLFKNQELVFRDPPSACAATPTSTY 158
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 4.9
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -2
Query: 371 TKASTIPL*RWSAAICLLTCCTWSSSLTRSMGATAV 264
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPAC23A1.03 |apt1||adenine phosphoribosyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.4 bits (53), Expect = 6.4
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = -1
Query: 357 DTLVTLVGGDLLAHVLYLE 301
D LVT +GG+L+ H+ LE
Sbjct: 139 DELVTRLGGELVGHLFLLE 157
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 6.4
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +1
Query: 355 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 447
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 25.0 bits (52), Expect = 8.5
Identities = 21/91 (23%), Positives = 38/91 (41%)
Frame = +1
Query: 220 AKDFLAGGISAAVSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLL 399
A F A +S+A+S P++ +K+ Q + + I F K +GL
Sbjct: 18 ASTFSAALVSSAISNVIGYPLDSIKVRQQTYN----------FPTIRSCFQNAVKNEGLK 67
Query: 400 SFWRGNFANVIRYFPTQALNFAFKDKYKQVF 492
+RG +I +++++F D K F
Sbjct: 68 GLYRGLTLPLISATLSRSVSFTVYDSLKLTF 98
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,295,469
Number of Sequences: 5004
Number of extensions: 44559
Number of successful extensions: 165
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 264253462
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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