Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0876
         (579 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0V4N5 Cluster: Predicted protein; n=1; Phaeosphaeria n...    40   0.032
UniRef50_Q4YU13 Cluster: Putative uncharacterized protein; n=1; ...    33   3.7  

>UniRef50_Q0V4N5 Cluster: Predicted protein; n=1; Phaeosphaeria
           nodorum|Rep: Predicted protein - Phaeosphaeria nodorum
           (Septoria nodorum)
          Length = 1203

 Score = 40.3 bits (90), Expect = 0.032
 Identities = 19/49 (38%), Positives = 29/49 (59%)
 Frame = +1

Query: 415 SEAQVGSFCFYIASICTVVSFIFLEVSTRVLQINVIFFERMFVIKSYPM 561
           ++A  GSF F+IA IC V SF F +V    L  +++    MF +K +P+
Sbjct: 378 TQANFGSFAFHIACICAVTSFFFCQVQD-TLPRDLLLEHNMFPLKFFPL 425


>UniRef50_Q4YU13 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium berghei|Rep: Putative uncharacterized protein
           - Plasmodium berghei
          Length = 1027

 Score = 33.5 bits (73), Expect = 3.7
 Identities = 22/77 (28%), Positives = 41/77 (53%)
 Frame = -1

Query: 519 YIDLKNTSRNFQKNKRYHSTYRGDIKTE*SDLCF*CRDNLTSLFLPTKQSVSLRHLRTSY 340
           Y  L  TS+ ++KNK+ H  + GDI          C DN+ SL+   K++++ +  + S 
Sbjct: 490 YDKLYKTSKEYKKNKKSHPEWEGDI----------CIDNIFSLYSNGKENITDKVNKNS- 538

Query: 339 RIQGTSNL*YSSLVHLD 289
           +  G++N+  + L  +D
Sbjct: 539 KFHGSNNIMNTILDEID 555


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 487,905,322
Number of Sequences: 1657284
Number of extensions: 8826981
Number of successful extensions: 19583
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 18909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19576
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 39987623712
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)