Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0876
         (579 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    28   0.86 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   2.6  
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual     27   2.6  
SPAC328.05 |||RNA-binding protein involved in export of mRNAs|Sc...    25   6.1  
SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...    25   6.1  
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    25   8.0  
SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway prote...    25   8.0  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   8.0  

>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 579 KVVLLIHGIRFNDKHSFKEYYIDLKNTSRNFQKNKRYHSTYRGDIK 442
           K  +L+ G   +  H FKE+ ++L++TS +  +  +    Y  D+K
Sbjct: 257 KTTVLVEGGEVS-VHPFKEWLLNLQHTSPDLYEESKDFEGYENDVK 301


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -2

Query: 110 F*TYIDIVKYSNVNRYGSFI 51
           F +++D+VK  N+ RY SFI
Sbjct: 385 FFSFVDVVKQLNMQRYDSFI 404


>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +2

Query: 71   SHYCI*QYLCMFKTAHCLYKNLLTKNLDVTIKSR 172
            SH+CI  +L +F TA      +L KN+  TI  +
Sbjct: 900  SHFCISNFLILFITALEHASAILCKNITYTIHEK 933


>SPAC328.05 |||RNA-binding protein involved in export of
           mRNAs|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 359 LKDTDCFVGKKSEVRLSRHQKHKSDHSVF 445
           L +TD F+G+  EVRL R   HK +  V+
Sbjct: 243 LHNTD-FMGRTLEVRLDRFAHHKIEDLVY 270


>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/58 (20%), Positives = 27/58 (46%)
 Frame = +3

Query: 336 FCN*SEDVLKTLIVL*VKRVKLGYPDIRSTSRIILFLYRLYMYCGIFYFSGSFDSCSS 509
           +C    D     ++  VK ++  +P++     + L  Y  + +CG+ Y  G+ ++  S
Sbjct: 89  YCGSMADSENGPVIKAVKEIRHLFPELVVACDVCLCEYTDHGHCGLLYEDGTINNAKS 146


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1666

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = +3

Query: 384 VKRVKLGYPDIRSTSRIILFLYRLYMYCGIFYFSGSFDSCSSD 512
           V ++   Y D+    RII    +   + G++Y+ GS  + + D
Sbjct: 679 VVQIATRYSDLVGAQRIIEMFEKFKTFEGLYYYLGSIVNITED 721


>SPAC27D7.12c |but1|SPAC27D7.12, mug107|neddylation pathway protein
           But1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 243

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +3

Query: 60  SVPIHITVFNNIYVCLK 110
           +VP+HI+V ++ Y CL+
Sbjct: 122 NVPLHISVISHFYPCLQ 138


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 462 YCGIFYFSGSFDSCSSDQ 515
           Y G+FYFS +F  C  +Q
Sbjct: 476 YKGLFYFSSAFRPCPIEQ 493


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,187,580
Number of Sequences: 5004
Number of extensions: 42573
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)