Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0876
         (579 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0417 - 3296066-3296356,3296491-3296541,3296657-3296862,329...    29   2.0  
12_01_1021 - 10419383-10419529,10419684-10419733,10419821-104199...    28   4.7  
11_01_0421 + 3236798-3237144,3237356-3237441,3237741-3237895,323...    27   8.2  

>12_01_0417 -
           3296066-3296356,3296491-3296541,3296657-3296862,
           3296944-3297237,3297335-3297533,3297620-3297679,
           3297786-3297975,3298112-3298245,3298339-3298602,
           3299158-3299344,3299476-3299540,3299622-3299776,
           3300650-3300735,3301240-3301478
          Length = 806

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 66  PIHITVFNNIYVCLKLHIVYTKICLLKI*MSL*NRG 173
           P+H   F+++ V L LHIVY K    K  + + ++G
Sbjct: 214 PVHFDAFHSVLVDLTLHIVYLKAGATKSSLKIPDQG 249


>12_01_1021 -
           10419383-10419529,10419684-10419733,10419821-10419938,
           10420498-10420540,10420674-10420825,10420876-10420965,
           10422881-10423013,10424397-10424515
          Length = 283

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/34 (32%), Positives = 23/34 (67%)
 Frame = +1

Query: 463 TVVSFIFLEVSTRVLQINVIFFERMFVIKSYPMY 564
           T+V+F +  +   +L + V+FF+ +F+I+ Y +Y
Sbjct: 220 TLVNF-YGNIGKTLLSLEVVFFDILFIIQHYVLY 252


>11_01_0421 +
           3236798-3237144,3237356-3237441,3237741-3237895,
           3237971-3238035,3238180-3238363,3238785-3239048,
           3239141-3239224,3239727-3239984,3240214-3240472,
           3240550-3240755,3240896-3240946,3241041-3241337
          Length = 751

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 66  PIHITVFNNIYVCLKLHIVYTKICLLK 146
           P+H   F+ + V L +HIVY K  + K
Sbjct: 249 PVHFDAFHPVLVDLTMHIVYLKAGVTK 275


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,173,503
Number of Sequences: 37544
Number of extensions: 212135
Number of successful extensions: 344
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 344
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)