Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0876
         (579 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6724| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  
SB_18359| Best HMM Match : UPF0171 (HMM E-Value=1e-09)                 27   8.4  

>SB_6724| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -1

Query: 399 TSLFLPTKQSVSLRHLRTSYRIQGTSNL*YSSLVHLDQCVIR 274
           TSL L   Q   L +LR  + I+    L + ++ H  QCV R
Sbjct: 622 TSLALHNYQKARLEYLREQFNIRENDFLTFDAMRHAAQCVGR 663


>SB_18359| Best HMM Match : UPF0171 (HMM E-Value=1e-09)
          Length = 557

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = +1

Query: 424 QVGSFCFYIASICTVVSFIFLEVSTRVLQINVIFFERMFVIKSY 555
           +V  +CFY  ++C   S +   V +R  +I  +F +++F I ++
Sbjct: 295 EVPPYCFYSTAVCNSGSSLLTSVISRFHRI--VFIQQVFAIAAH 336


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,442,223
Number of Sequences: 59808
Number of extensions: 284007
Number of successful extensions: 554
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1385833362
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)