Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0876
         (579 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74033-9|CAN99687.1|  228|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z74033-8|CAA98470.1|  218|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U50135-3|AAA93454.1|  329|Caenorhabditis elegans Squashed vulva ...    27   9.6  
U23172-15|AAN63408.1|  374|Caenorhabditis elegans Hypothetical p...    27   9.6  
AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical...    27   9.6  

>Z74033-9|CAN99687.1|  228|Caenorhabditis elegans Hypothetical
           protein F38B7.2b protein.
          Length = 228

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 425 KSDHSVFISPLYVLWYLLFFWKFRLVFFRSM 517
           K D  +F+ P+++L ++  FW F+ +  R M
Sbjct: 138 KIDSRLFVPPIFLLIFISIFWCFKRMLRRDM 168


>Z74033-8|CAA98470.1|  218|Caenorhabditis elegans Hypothetical
           protein F38B7.2a protein.
          Length = 218

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 425 KSDHSVFISPLYVLWYLLFFWKFRLVFFRSM 517
           K D  +F+ P+++L ++  FW F+ +  R M
Sbjct: 128 KIDSRLFVPPIFLLIFISIFWCFKRMLRRDM 158


>U50135-3|AAA93454.1|  329|Caenorhabditis elegans Squashed vulva
           protein 7 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 472 SFIFLEVSTRVLQINVIFFERMFVIKSYP 558
           SF+F+ V   +  I ++FF +MF I  +P
Sbjct: 41  SFLFVGVGQMMATILILFFAKMFRIVQFP 69


>U23172-15|AAN63408.1|  374|Caenorhabditis elegans Hypothetical
           protein F25B5.7d protein.
          Length = 374

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 10/17 (58%), Positives = 15/17 (88%)
 Frame = +2

Query: 458 YVLWYLLFFWKFRLVFF 508
           Y++++LLFFW FR +FF
Sbjct: 357 YLMFFLLFFW-FRALFF 372


>AC006673-11|AAF39920.1|  311|Caenorhabditis elegans Hypothetical
           protein K09D9.3 protein.
          Length = 311

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +2

Query: 458 YVLWYLLFFWKFRLVFFRSM*YSLKECLSL 547
           + +W  L  +  +LVFFR++ +SL  C SL
Sbjct: 100 FSVWCTLHIFVAKLVFFRTIPHSLMLCYSL 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,806,852
Number of Sequences: 27780
Number of extensions: 231160
Number of successful extensions: 523
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 515
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)