Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0875
         (738 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000F201B5 Cluster: PREDICTED: hypothetical protein;...    36   1.4  
UniRef50_Q4Y148 Cluster: Putative uncharacterized protein; n=5; ...    33   7.3  
UniRef50_A7SDL1 Cluster: Predicted protein; n=4; Eumetazoa|Rep: ...    33   7.3  

>UniRef50_UPI0000F201B5 Cluster: PREDICTED: hypothetical protein;
           n=2; Danio rerio|Rep: PREDICTED: hypothetical protein -
           Danio rerio
          Length = 243

 Score = 35.5 bits (78), Expect = 1.4
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +3

Query: 582 TLVNNNQIL*LHEVKGTTFLCLCASSIGTVPKNNDIP 692
           TL+ N   L + EVKG  + C+  SS+GTV  + +IP
Sbjct: 167 TLIANGSRLDISEVKGVNYTCVIKSSLGTVMTHYEIP 203


>UniRef50_Q4Y148 Cluster: Putative uncharacterized protein; n=5;
            Plasmodium (Vinckeia)|Rep: Putative uncharacterized
            protein - Plasmodium chabaudi
          Length = 2771

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 17/43 (39%), Positives = 27/43 (62%)
 Frame = -3

Query: 433  ICMETYLLTFYI*MELFVMEKYISKIGKNVKKKLNIIVLDTYF 305
            IC ETY+  ++  +  +  EKYI K  KN++K+ N +V D Y+
Sbjct: 1655 IC-ETYINPYFY-INTYYFEKYIRKRYKNLRKEDNYLVYDFYY 1695


>UniRef50_A7SDL1 Cluster: Predicted protein; n=4; Eumetazoa|Rep:
           Predicted protein - Nematostella vectensis
          Length = 187

 Score = 33.1 bits (72), Expect = 7.3
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 592 TIIRYYSYTKLKALHFYVYVHHLLEPYPKTMTYLSRYHWTEL 717
           T+  Y S+    ++  ++++HH L  YP  + Y+S  HW  +
Sbjct: 96  TLATYPSHIGYISITHWLHIHHTLATYPSHIGYISITHWLHI 137



 Score = 33.1 bits (72), Expect = 7.3
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 592 TIIRYYSYTKLKALHFYVYVHHLLEPYPKTMTYLSRYHWTEL 717
           T+  Y S+    ++  ++++HH L  YP  + Y+S  HW  +
Sbjct: 118 TLATYPSHIGYISITHWLHIHHTLATYPSHIGYISITHWLHI 159



 Score = 33.1 bits (72), Expect = 7.3
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = +1

Query: 592 TIIRYYSYTKLKALHFYVYVHHLLEPYPKTMTYLSRYHWTEL 717
           T+  Y S+    ++  ++++HH L  YP  + Y+S  HW  +
Sbjct: 140 TLATYPSHIGYISITHWLHIHHTLATYPSHIGYISIKHWLHI 181


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,568,104
Number of Sequences: 1657284
Number of extensions: 12711574
Number of successful extensions: 24240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 23328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24229
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 60088620670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)