Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0875
(738 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2) 33 0.18
SB_2091| Best HMM Match : Extensin_2 (HMM E-Value=0.69) 31 0.97
SB_1406| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_4208| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
>SB_46539| Best HMM Match : Keratin_B2 (HMM E-Value=1.2)
Length = 300
Score = 33.5 bits (73), Expect = 0.18
Identities = 23/82 (28%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +1
Query: 37 IVSFNMDRFCFLLKCRIH*RVPNIDSYHTEFTCIHAIM*LNCMFQFSISQSQLYFIYLFK 216
IV + R+C +L CR V ++ Y C H +M L+C + + + I +
Sbjct: 110 IVDMLLYRYCDMLLCRYV--VLSLGCYVVMLLCHHVVMSLSCYIDMLLCRCVVMSICCYD 167
Query: 217 LRLLCE-GVIAMIFHFKHLIKC 279
+ LLC V + F LI C
Sbjct: 168 VMLLCRYNVTSKYFCVDFLICC 189
>SB_2091| Best HMM Match : Extensin_2 (HMM E-Value=0.69)
Length = 296
Score = 31.1 bits (67), Expect = 0.97
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +1
Query: 388 TPFRYKMSTNMFPYKYTVCIPNYHIGQSNVTILLY 492
TPF+ +T +FPY C+P+ G SN + Y
Sbjct: 186 TPFKGSSNTILFPYDTYDCVPSPFKGSSNTILFPY 220
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 388 TPFRYKMSTNMFPYKYTVCIPNYHIGQSNVTILLY 492
TPF+ +T +FPY C+P G SN + Y
Sbjct: 60 TPFKGSSNTILFPYDTYDCVPYPFKGSSNTNLFPY 94
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 388 TPFRYKMSTNMFPYKYTVCIPNYHIGQSNVTILLY 492
+PF+ +T +FPY C+P+ G SN + Y
Sbjct: 18 SPFKGSSNTILFPYDTYDCVPSPFKGSSNTILFPY 52
Score = 29.5 bits (63), Expect = 3.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 388 TPFRYKMSTNMFPYKYTVCIPNYHIGQSNVTILLY 492
TPF+ +T +FPY C P+ G SN + Y
Sbjct: 228 TPFKGSSNTILFPYDTYDCAPSPFKGSSNTILFPY 262
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 388 TPFRYKMSTNMFPYKYTVCIPNYHIGQSNVTILLY 492
+PF+ +T +FPY C+P+ G SN + Y
Sbjct: 249 SPFKGSSNTILFPYDTYDCVPSPFKGSSNTILFPY 283
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 391 PFRYKMSTNMFPYKYTVCIPNYHIGQSNVTILLY 492
PF+ +TN+FPY C P+ G N + Y
Sbjct: 82 PFKGSSNTNLFPYDTYDCAPSPFKGSPNTILFPY 115
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 391 PFRYKMSTNMFPYKYTVCIPNYHIGQSNVTILLY 492
PF+ +T +FPY C+P G SN + Y
Sbjct: 166 PFKGSSNTILFPYDTYDCVPTPFKGSSNTILFPY 199
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 388 TPFRYKMSTNMFPYKYTVCIPNYHIGQSNVTILLY 492
+PF+ +T +FPY C P+ G SN + Y
Sbjct: 102 SPFKGSPNTILFPYDTYDCAPSSFKGSSNTILFPY 136
>SB_1406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 209
Score = 29.9 bits (64), Expect = 2.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 388 TPFRYKMSTNMFPYKYTVCIPNYHIGQSNVTILLY 492
TPF+ +T +FPY C P+ G SN + Y
Sbjct: 60 TPFKGSSNTILFPYDTYDCAPSPFKGSSNTNLFPY 94
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 388 TPFRYKMSTNMFPYKYTVCIPNYHIGQSNVTILLY 492
+PF+ +T +FPY C+P+ G SN + Y
Sbjct: 18 SPFKGSSNTILFPYDTYDCVPSPFKGSSNTILFPY 52
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 388 TPFRYKMSTNMFPYKYTVCIPNYHIGQSNVTILLY 492
+PF+ +TN+FPY C P+ G N + Y
Sbjct: 81 SPFKGSSNTNLFPYDTYDCAPSPFKGSPNTILFPY 115
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 388 TPFRYKMSTNMFPYKYTVCIPNYHIGQSNVTILLY 492
+PF+ +T +FPY C P+ G SN + Y
Sbjct: 102 SPFKGSPNTILFPYDTYDCAPSSFKGSSNTILFPY 136
>SB_24117| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1276
Score = 28.7 bits (61), Expect = 5.2
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 128 LPAYML*CS*IVCFNLVFLNLNCISFIYLS*DCC 229
+P Y L C + C++L+ L + C + + L+ CC
Sbjct: 1084 IPCYDLLCLAMTCYDLLCLAVPCYALLSLAMPCC 1117
>SB_4208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 75
Score = 27.9 bits (59), Expect = 9.1
Identities = 12/34 (35%), Positives = 17/34 (50%)
Frame = +1
Query: 391 PFRYKMSTNMFPYKYTVCIPNYHIGQSNVTILLY 492
PF+ +T +FPY C+P G SN + Y
Sbjct: 19 PFKGSSNTILFPYDTYDCVPYPFKGSSNTILFPY 52
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,967,998
Number of Sequences: 59808
Number of extensions: 412473
Number of successful extensions: 736
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 678
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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