Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0875
         (738 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-3|CAA20954.1|  228|Caenorhabditis elegans Hypothetical ...    28   7.9  
AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical ...    28   7.9  

>AL031627-3|CAA20954.1|  228|Caenorhabditis elegans Hypothetical
           protein Y102A5C.8 protein.
          Length = 228

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 37  IVSFNMDRFCFLLKCRIH*RVPNIDSYHTEFTCIHAIM*LNCMFQF 174
           I+ F++ R C  L+  I  R P I+  H  F    +++ +N  F+F
Sbjct: 28  ILRFSLRRVCRNLRNVIDNRDPEIEQVHVLFQSNQSVLTINSTFEF 73


>AC024831-7|AAY86310.1|  711|Caenorhabditis elegans Hypothetical
           protein Y55F3C.9 protein.
          Length = 711

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 35  LLFHSIWIDFVFFSSVEFTKESPILIH 115
           LL HS+ + F+ F  V  TK   +L H
Sbjct: 117 LLIHSVCLGFIIFIVVHCTKSDSVLFH 143


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,392,332
Number of Sequences: 27780
Number of extensions: 337271
Number of successful extensions: 753
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 753
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)