Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0875
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.0  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.0  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    23   3.0  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    23   3.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   4.0  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   6.9  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.9  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 536 IFYHKEKCFYY*PQIYSKIVTFD 468
           +F+H ++   Y P++Y K  TF+
Sbjct: 41  LFWHVDQPTVYHPELYQKARTFN 63


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 392 HLDIKCQQICFHTNTLYAFR 451
           HL++  + I  H NT+Y  R
Sbjct: 258 HLELTFENILSHINTVYVLR 277


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -2

Query: 536 IFYHKEKCFYY*PQIYSKIVTFD 468
           +F+H ++   Y P++Y K  TF+
Sbjct: 41  LFWHVDQPTVYHPELYQKARTFN 63


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +2

Query: 392 HLDIKCQQICFHTNTLYAFR 451
           HL++  + I  H NT+Y  R
Sbjct: 258 HLELTFENILSHINTVYVLR 277


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +3

Query: 435 HCMHSELSHRTIKRYNLTI 491
           HC H+ + HR +K  NL +
Sbjct: 24  HCHHNGVVHRDLKPENLLL 42


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = +2

Query: 17  HNCSDNLLFHSIWID 61
           H+C  NL  + +WI+
Sbjct: 580 HSCDPNLAVYGVWIN 594


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 68  FFSSVEFTKESPILIHITQNLPAYML 145
           FF+S E    S + +H T+N   +M+
Sbjct: 473 FFASHEVVGSSLLFVHDTKNAGIWMI 498


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 68  FFSSVEFTKESPILIHITQNLPAYML 145
           FF+S E    S + +H T+N   +M+
Sbjct: 388 FFASHEVVGSSLLFVHDTKNAGIWMI 413


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 68  FFSSVEFTKESPILIHITQNLPAYML 145
           FF+S E    S + +H T+N   +M+
Sbjct: 707 FFASHEVVGSSLLFVHDTKNAGIWMI 732


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,495
Number of Sequences: 438
Number of extensions: 4400
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)