Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0872
         (723 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   3.3  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   4.4  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.4  
AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory recept...    22   5.8  
AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory recept...    22   5.8  
AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory recept...    22   5.8  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    21   7.6  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    21   7.6  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +3

Query: 627 ATTSVLSSCS*IPWNNATGSD 689
           ++ SV++SCS +P   + GSD
Sbjct: 97  SSRSVMTSCSSVPTTASYGSD 117


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/29 (27%), Positives = 14/29 (48%)
 Frame = +3

Query: 393 TRLAVTWRPMWTRSASRRPRFRNWACVHQ 479
           ++L  T+R  + R     P    W C++Q
Sbjct: 35  SKLLYTYRQPYPRQKKSHPPQWTWQCINQ 63


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +3

Query: 663 PWNNATGSDSAWE 701
           PW N T S   WE
Sbjct: 524 PWANCTASTRCWE 536


>AM292376-1|CAL23188.2|  402|Tribolium castaneum gustatory receptor
           candidate 55 protein.
          Length = 402

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +2

Query: 389 SYQARGHLAADVDPLGITTATLPELGMRAPSSELIMRKY 505
           ++ ARG L    D L     +  + G R    +L+ R Y
Sbjct: 109 TFLARGTLIKSFDMLSHVDVSFIKAGFRLEYKQLLKRSY 147


>AM292334-1|CAL23146.2|  390|Tribolium castaneum gustatory receptor
           candidate 13 protein.
          Length = 390

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 540 NTLSMSASSKLKYFLMMSSELG 475
           N +SMS   KLK+ L +   LG
Sbjct: 71  NCVSMSNLKKLKFLLKLGQLLG 92


>AM292332-1|CAL23144.2|  344|Tribolium castaneum gustatory receptor
           candidate 11 protein.
          Length = 344

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/39 (28%), Positives = 17/39 (43%)
 Frame = +2

Query: 389 SYQARGHLAADVDPLGITTATLPELGMRAPSSELIMRKY 505
           ++ ARG L    D L     +  + G R    +L+ R Y
Sbjct: 109 TFLARGTLIKSFDMLSHVDVSFIKAGFRLEYKQLLKRSY 147


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -1

Query: 552 EGSLNTLSMSASSKLKYFLMMS 487
           EGS+N   M+ASS L+   + S
Sbjct: 103 EGSVNYSKMAASSSLRAVFIKS 124


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = +3

Query: 426 TRSASRRPRFRNWAC 470
           T S+++RP+F N +C
Sbjct: 195 TCSSAKRPKFENSSC 209


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,562
Number of Sequences: 336
Number of extensions: 4183
Number of successful extensions: 15
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)