Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0872
(723 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 122 5e-29
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo... 30 0.38
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc... 30 0.38
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 30 0.38
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.89
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p... 27 2.1
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 27 2.1
SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subuni... 27 2.7
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S... 27 3.6
SPAC821.05 |||translation initiation factor eIF3h|Schizosaccharo... 27 3.6
SPCC553.10 |||conserved fungal protein|Schizosaccharomyces pombe... 27 3.6
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy... 26 4.7
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 26 4.7
SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyce... 25 8.3
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|... 25 8.3
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 122 bits (294), Expect = 5e-29
Identities = 76/218 (34%), Positives = 113/218 (51%), Gaps = 4/218 (1%)
Frame = +2
Query: 44 TAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNA-TNGAQ 220
T S+ NR ++ + FL G ++ YV+ MY+AW DPNSVHASW A+F+N G
Sbjct: 28 TCLSSLQQNRTFATQPTDDFLTGGAADYVDEMYDAWKKDPNSVHASWQAYFKNVQERGVS 87
Query: 221 PGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKIIDDHLAVQAIIRSYQA 400
P A+ PP L Y + L S + + I G ++ VQ ++R+YQ+
Sbjct: 88 PSKAFQAPP-LLDYADSYTALDSSLINGNNYADIDVGI---------YMKVQLLVRAYQS 137
Query: 401 RGHLAADVDPLGITTATLPELGMRAPSSELIMRKYFNFDEADMDRVFKL-PS--TTFIGE 571
RGH A +DPLGI + P SEL + +++ F E+D++R L P F
Sbjct: 138 RGHHLAKLDPLGI------NVNHNRP-SELTL-EHYGFTESDLNRTIHLGPGILPNFREA 189
Query: 572 KEKALPLREILNRLEQAYCNNIGIEFMFINSLEQCNWI 685
K + LREI+ E+ YC + +EF I+S ++ NWI
Sbjct: 190 GRKTMTLREIVETCEKIYCGSFAVEFTHISSRKRSNWI 227
>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
Length = 650
Score = 29.9 bits (64), Expect = 0.38
Identities = 29/140 (20%), Positives = 56/140 (40%), Gaps = 1/140 (0%)
Frame = +2
Query: 35 KPQTAAVSVNANRLKSSTAAEPFLNGSSSAYVETM-YNAWLADPNSVHASWDAFFRNATN 211
KP + + N N + + + NG++S+ V Y ++ S F T
Sbjct: 360 KPMASPMLPNVNSMPYLSNGDHNNNGNTSSPVSRFSYGQHTSNVPSTQKLPSNF--RVTQ 417
Query: 212 GAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKIIDDHLAVQAIIRS 391
GA P Y PPP + P K ++ T+ S+ + S E + + ++S
Sbjct: 418 GAPPSHTYGPPPPVQP--KPKISPTTPRLSTLALADDMFSSTAKETVPTNEAVFTGDVKS 475
Query: 392 YQARGHLAADVDPLGITTAT 451
+ ++ + +PL + A+
Sbjct: 476 FDSQESNIIESEPLSASNAS 495
>SPAC29B12.07 |sec16||multidomain vesicle coat component
Sec16|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1995
Score = 29.9 bits (64), Expect = 0.38
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 218 QPGAAYTP--PPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPI 340
QP +A+ P P LAP N+N +++ P+ G M S + +
Sbjct: 1733 QPASAHLPNLQPTLAPINQNAYVPSNIAPAMGAMQSAPSAEAV 1775
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 29.9 bits (64), Expect = 0.38
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = +2
Query: 239 PPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKIIDDHLAVQAI 382
P P PY +N TS+ PS G P+ S + +I ++A Q I
Sbjct: 603 PVPGYTPYMRNPSQHTSVAPSPNGTPTSGNSSTVGSPMI-GYMAPQFI 649
>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 860
Score = 28.7 bits (61), Expect = 0.89
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +2
Query: 242 PPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKIIDDHLAVQAIIRSYQARGHL 412
PP+ AP + P T+ V + G+P + G+ I + + Q I S Q+ GH+
Sbjct: 71 PPSTAPGSAGSTPKTTPVSLNAGVPPSNTGANIT---TNSNNNAQTISSSSQSVGHI 124
>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 584
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Frame = +2
Query: 209 NGAQPGAAYTPPPNLAPYNKNEVPLTSLV---PSSGGMPSIS 325
+GAQ G+ PP L P+N ++ +L PS +P +S
Sbjct: 493 DGAQSGSPQFPPFELPPHNYSQAQSPNLATPSPSFSSLPDVS 534
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Frame = +2
Query: 197 RNATNGAQPGAAYTPPPN---LAPYNKNEVPLTSLVPSSGGMPSISAGSPIN 343
R T+ + P +A +P PN P K E P +++ S+ +++A +P N
Sbjct: 74 RPKTSTSTPKSAASPAPNPPASVPEKKVEAPSSTVAESTSTTQTVAAAAPSN 125
>SPCC18.07 |rpc53||DNA-directed RNA polymerase III complex subunit
Rpc53|Schizosaccharomyces pombe|chr 3|||Manual
Length = 330
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = +2
Query: 212 GAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSG 307
G G+ Y PPPN+ K++ L+ L SSG
Sbjct: 67 GRPIGSVYVPPPNVKNEEKDDA-LSKLAASSG 97
>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 26.6 bits (56), Expect = 3.6
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 98 PFLNGSSSAYVETMYNAWLAD-PNSVHASWDAFFRNATNGAQPGAAYTPPPNLAPYNKNE 274
P N + SA + + ++D PN H DAF ++ + QP +A P L+ ++
Sbjct: 9 PVGNETKSAALNALPKIKISDSPNRHHNLVDAFMQSPSYSTQPKSA-VEPLGLS-FSPGY 66
Query: 275 VPLTSLVPSSGGMPSISAGSPI 340
+ +S P G + S S+ P+
Sbjct: 67 ISPSSQSPHHGPVRSPSSRKPL 88
>SPAC821.05 |||translation initiation factor
eIF3h|Schizosaccharomyces pombe|chr 1|||Manual
Length = 357
Score = 26.6 bits (56), Expect = 3.6
Identities = 20/69 (28%), Positives = 30/69 (43%)
Frame = +2
Query: 113 SSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSL 292
SS +VET Y A+PNS+ +D ++NG AY P ++ + S
Sbjct: 118 SSPFFVETQYAYQKANPNSIAFLYD--LSQSSNGTLYMRAYQLTPEFMAAHEEKTWTASS 175
Query: 293 VPSSGGMPS 319
+ S PS
Sbjct: 176 LNSHNLTPS 184
>SPCC553.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 26.6 bits (56), Expect = 3.6
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = -1
Query: 561 NVVEGSLNTLSMSASSKLKYFLMMSSELGARMPSSGSVAVVMPSGSTSAA 412
N+VEG+ ++ S S+SS +S + PS+ S + S S+S++
Sbjct: 109 NIVEGAASSSSSSSSSSSSLVSSTTSSSSSATPSTTSSSSSSSSSSSSSS 158
>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 603
Score = 26.2 bits (55), Expect = 4.7
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Frame = +2
Query: 221 PGAAYTPPPNLAPYN-KNEVPLTSLVPSSGGMPSISAGSPINEKIIDDHLAVQAI 382
P + + P NL+P +NE P T+ +PS P S S N Q++
Sbjct: 315 PSHSSSVPSNLSPNPAQNENPSTTSIPSINNQPFPSGLSASNSNFASSSFIPQSV 369
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 26.2 bits (55), Expect = 4.7
Identities = 7/18 (38%), Positives = 11/18 (61%)
Frame = -3
Query: 262 VWREIGRWRVCGAWLSSV 209
+W EI RW +CG + +
Sbjct: 361 LWSEISRWALCGGYTKDI 378
>SPAC20G8.06 |||CCR4-Not complex subunit Not1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2100
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 543 LNTLSMSASSKLKYFLMMSSELGARMPSS 457
++T++ S SK +YFL+ + R PSS
Sbjct: 1966 ISTMNRSCDSKCRYFLLTAIANQLRYPSS 1994
>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
2|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 8.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 81 APPRQNPSSMAPVQLTSRPCTMHGSPTQTPYTR 179
+P + P+++APV+ TS T + TP R
Sbjct: 77 SPKKATPAAVAPVEATSAVDTSEAVASMTPNKR 109
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,200,531
Number of Sequences: 5004
Number of extensions: 68390
Number of successful extensions: 267
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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