Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0872
(723 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0741 + 19187333-19188868,19189264-19189490,19189578-191898... 86 1e-26
07_03_1795 + 29603694-29605208,29605423-29605649,29605739-296060... 81 1e-26
06_03_0232 - 18507872-18508792 30 1.6
11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861 29 2.8
06_02_0298 + 13921310-13921834,13921923-13922063,13923601-139239... 29 2.8
08_01_0914 + 9010613-9013316,9013537-9013748 29 3.7
04_04_1076 - 30639835-30640898,30641613-30641915,30642008-306420... 29 3.7
06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797 29 4.9
12_02_1046 + 25662715-25662884,25663163-25663757 28 6.5
04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476 28 6.5
04_03_0789 + 19660713-19660896,19661405-19662027 28 6.5
10_08_0974 + 21969713-21971914 28 8.6
02_01_0586 - 4334896-4335177,4336340-4338007 28 8.6
>04_03_0741 +
19187333-19188868,19189264-19189490,19189578-19189899,
19190311-19190399,19190882-19191128,19191756-19191884,
19191967-19192182,19192256-19192379,19192857-19193095
Length = 1042
Score = 86.2 bits (204), Expect(2) = 1e-26
Identities = 47/129 (36%), Positives = 71/129 (55%), Gaps = 4/129 (3%)
Frame = +2
Query: 323 SAGSP-INEKIIDDHLAVQAIIRSYQARGHLAADVDPLGITTATLPELGMRAPSSELIMR 499
+A SP I+ + I + + + ++R+YQ GHL A +DPL + +P++ +
Sbjct: 98 AATSPGISGQTIQESMRLLLLVRAYQVSGHLKAKLDPLALEERPIPDV---------LDP 148
Query: 500 KYFNFDEADMDRVFKLP---STTFIGEKEKALPLREILNRLEQAYCNNIGIEFMFINSLE 670
++ F EAD+DR F L F+ E LR +L RLEQAYC IG E+M I E
Sbjct: 149 AFYGFSEADLDREFFLGVWRMAGFLSENRPVQTLRSVLERLEQAYCGTIGYEYMHIPDRE 208
Query: 671 QCNWIRQRM 697
+CNW+R R+
Sbjct: 209 KCNWLRDRI 217
Score = 52.0 bits (119), Expect(2) = 1e-26
Identities = 22/40 (55%), Positives = 27/40 (67%)
Frame = +2
Query: 83 STAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRN 202
S + FL+G+SS Y+E + AW ADP SV SWD FFRN
Sbjct: 54 SRLTDSFLDGTSSVYLEELQRAWEADPTSVDESWDNFFRN 93
>07_03_1795 +
29603694-29605208,29605423-29605649,29605739-29606071,
29606229-29606475,29606948-29607076,29607161-29607376,
29607454-29607577,29608377-29608612
Length = 1008
Score = 81.4 bits (192), Expect(2) = 1e-26
Identities = 46/128 (35%), Positives = 73/128 (57%), Gaps = 3/128 (2%)
Frame = +2
Query: 323 SAGSPINEKIIDDHLAVQAIIRSYQARGHLAADVDPLGITTATLPELGMRAPSSELIMRK 502
SAG ++ + I + + + ++R+YQ GH+ A +DPL + +P+ +L +
Sbjct: 94 SAG--LSGQTIQESMQLLLLVRAYQVNGHMKAKLDPLRLDDRAVPD--------DLDLSL 143
Query: 503 YFNFDEADMDRVFKLP---STTFIGEKEKALPLREILNRLEQAYCNNIGIEFMFINSLEQ 673
Y F EAD+DR F L F+ + L LREIL++LEQAYC IG E+M I ++
Sbjct: 144 Y-GFTEADLDREFFLGVWRMAGFLSDNRPVLTLREILSKLEQAYCGPIGYEYMHIPDRDK 202
Query: 674 CNWIRQRM 697
CNW+R ++
Sbjct: 203 CNWLRDKI 210
Score = 56.4 bits (130), Expect(2) = 1e-26
Identities = 25/50 (50%), Positives = 32/50 (64%)
Frame = +2
Query: 83 STAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAA 232
S + FL+G+SS Y+E + AW ADP+SV SWD FFRN A P +A
Sbjct: 46 SRLTDSFLDGTSSVYLEELQRAWEADPSSVDESWDNFFRNFLGQAAPSSA 95
>06_03_0232 - 18507872-18508792
Length = 306
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +2
Query: 242 PPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKI 352
PP+ +P VP TS SS PS S+ SPI + +
Sbjct: 146 PPSSSPVLPRSVPSTSAGLSSSASPSSSSSSPIKKAL 182
>11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861
Length = 592
Score = 29.5 bits (63), Expect = 2.8
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = +2
Query: 203 ATNGAQPGAAYTP--PPNLAPYNKNEVPLTSLVPSSGGMPSIS 325
AT G+ G P PP+LA + PL+ L+ S+G +PS+S
Sbjct: 479 ATAGSGRGKQSVPSVPPDLAGGTRRTRPLSLLIHSNGVVPSLS 521
>06_02_0298 +
13921310-13921834,13921923-13922063,13923601-13923951,
13924071-13924130,13924261-13924380,13924569-13924718
Length = 448
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 84 PPRQNPSSMAPVQLTSRPCTMHGSPTQTP 170
PP P S AP+Q +RP + G PT P
Sbjct: 273 PPPPPPPSPAPIQHFARPLHVWGHPTMDP 301
>08_01_0914 + 9010613-9013316,9013537-9013748
Length = 971
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = +2
Query: 35 KPQTAAVSVNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNG 214
K Q + +S+ + L TA+ +NG + + + + DP V +SWDA N TN
Sbjct: 4 KWQLSMLSLLTHALLLLTASSQTINGDDLSALMSFKSLIRNDPRGVLSSWDA-IGNGTNM 62
Query: 215 AQP 223
P
Sbjct: 63 TAP 65
>04_04_1076 -
30639835-30640898,30641613-30641915,30642008-30642068,
30643076-30644380
Length = 910
Score = 29.1 bits (62), Expect = 3.7
Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Frame = +3
Query: 78 RAPPRQNP-SSMAPVQLTSRPCTMHGSP---TQTPYTRLGMHFSAMRQTELSQAPHTRHR 245
R PP ++ S + TS + HGS + PY+ G H S+ R E + AP RHR
Sbjct: 580 RPPPSESHHGSSRSAKRTSSASSSHGSSGSVEERPYSS-GRHGSSGRMEEGTAAPSCRHR 638
>06_03_1042 - 27089563-27089594,27090017-27090577,27090740-27090797
Length = 216
Score = 28.7 bits (61), Expect = 4.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 203 ATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSG 307
A N P A PPP++AP + P T+ P+ G
Sbjct: 88 AGNPPTPAQAGAPPPSIAPGTGSPPPATTTPPAPG 122
>12_02_1046 + 25662715-25662884,25663163-25663757
Length = 254
Score = 28.3 bits (60), Expect = 6.5
Identities = 15/29 (51%), Positives = 20/29 (68%)
Frame = -2
Query: 230 RRLAELRLSHCGKMHPKTRVRSLGRRAMH 144
RRLAEL LS C P+ R+R++ R A+H
Sbjct: 56 RRLAELSLSSC---CPRLRLRAVRRLALH 81
>04_04_1046 + 30405805-30405858,30405991-30407950,30408460-30408476
Length = 676
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 624 TATTSVLSSCS*IPWNNATGSDSAWEPPERN 716
+++T SSC P ++ +GS S+W PP N
Sbjct: 453 SSSTYSSSSCPPEPTSSTSGSTSSWVPPRDN 483
>04_03_0789 + 19660713-19660896,19661405-19662027
Length = 268
Score = 28.3 bits (60), Expect = 6.5
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Frame = -1
Query: 639 PMLLQYACSKRFRISLNGSAFSFSPINVVEGSLNTLSMSASSKLKYFLMMSSELG--ARM 466
P L++YA + + + GS F + S S SA L + G + M
Sbjct: 174 PDLMRYA--QLLQGGVGGSYMPFGGAATMSSS-TVSSSSAPQILDFSTQQLIRAGPPSPM 230
Query: 465 PSSGSVAVVMPSGSTSAAR*PRAW 394
PSSGS + + ST++A P AW
Sbjct: 231 PSSGSGSATAAASSTTSASSPGAW 254
>10_08_0974 + 21969713-21971914
Length = 733
Score = 27.9 bits (59), Expect = 8.6
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 158 DPNSVHAS-WDAFFRNATNGAQPGAAYTPPPNLAPY 262
DP ++ AS W + FR QP AA PPP+L+P+
Sbjct: 67 DPVAITASLWVSSFR-----PQPTAAAPPPPSLSPF 97
>02_01_0586 - 4334896-4335177,4336340-4338007
Length = 649
Score = 27.9 bits (59), Expect = 8.6
Identities = 44/203 (21%), Positives = 88/203 (43%), Gaps = 16/203 (7%)
Frame = +2
Query: 140 YNAWLADPNSVHASWDAFFRNATNGAQPGAAYTPPPN----LAPYNKNEVPLTSLVPSSG 307
+ AW + + W+ +AT+G P + +P P+ L P ++ V G
Sbjct: 216 FAAWARPEDGDESIWE----DATDGFVPSPSRSPMPSRSPILKPLMEDLREYEEPVEEGG 271
Query: 308 GMPSISAGSPINEKIIDDHLAVQAIIRSYQ--ARGHLAADVDPLGITTATLPE--LGMRA 475
G+ S++ G+ N ++ D +Q ++R+++ G + G T + P+ L MRA
Sbjct: 272 GIQSLALGALDNSFLVGDS-GIQ-VVRNFEHGIHGKGVSVKFSGGSTNFSTPKKALLMRA 329
Query: 476 PSSELIMRKYFN-------FDEADMDRVFKLPSTTFIGEKEKALPLREILNRLEQAYCNN 634
++ L+M + + D++ K+ S G+ + +R+I N + A +
Sbjct: 330 ETNMLLMSPATDGKPHAKGVHQLDIE-TGKVVSEWKFGKDGADINMRDITNDSKGAQMDP 388
Query: 635 IGIEFMFINSLEQCNW-IRQRMG 700
F+ ++ C W +R R G
Sbjct: 389 SESTFLGLDDNRLCRWDMRDRRG 411
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,748,114
Number of Sequences: 37544
Number of extensions: 522269
Number of successful extensions: 1834
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1830
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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