Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0872
         (723 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07)                153   1e-37
SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)             36   0.025
SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)                 31   0.95 
SB_11758| Best HMM Match : DUF1518 (HMM E-Value=3.8)                   31   0.95 
SB_48561| Best HMM Match : AAA (HMM E-Value=0)                         31   1.2  
SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_33505| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38)                    30   2.2  
SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_4881| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)                29   5.0  
SB_13838| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_58698| Best HMM Match : E1_dh (HMM E-Value=4.9e-07)
          Length = 406

 Score =  153 bits (371), Expect = 1e-37
 Identities = 92/218 (42%), Positives = 126/218 (57%), Gaps = 1/218 (0%)
 Frame = +2

Query: 59  VNANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYT 238
           V   +  +  A EPFL+GSSS YVE MY +WL DP SVH SWDA+FRN + G  PG AY 
Sbjct: 7   VRPQQAAAVVAKEPFLSGSSSNYVEEMYASWLEDPKSVHRSWDAYFRNVSLGKSPGQAYY 66

Query: 239 PPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKIIDDHLAVQAIIRSYQARGHLAA 418
           PPP L       V + + +PS+    +I+A       I++DHLAV ++IRSYQ RGH  A
Sbjct: 67  PPPVLG----KPVAVATAMPSAVDQSNITA-------IVEDHLAVYSMIRSYQIRGHRKA 115

Query: 419 DVDPLGITTATLPELGMRAPSSELIMRKYFNFDEADMDRVFKLPSTTFI-GEKEKALPLR 595
            +DPLG                E  + K F           +LP++TFI GE   AL LR
Sbjct: 116 MLDPLG----------------EQDLDKVF-----------RLPNSTFIGGESATALTLR 148

Query: 596 EILNRLEQAYCNNIGIEFMFINSLEQCNWIRQRMGATG 709
           +I++RLE+ YC+++G++FMFI    +C+WIR++    G
Sbjct: 149 DIVDRLEKTYCHHVGLDFMFIPEKYKCDWIRKKFEMPG 186


>SB_54589| Best HMM Match : Extensin_2 (HMM E-Value=0.0081)
          Length = 667

 Score = 36.3 bits (80), Expect = 0.025
 Identities = 19/62 (30%), Positives = 30/62 (48%)
 Frame = +3

Query: 63  MPIG*RAPPRQNPSSMAPVQLTSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHTRH 242
           +P G ++PP  +P   +P+    R     GSP+  P  R   + S  R +  SQ+P   H
Sbjct: 256 IPDGTQSPPPSSPFLQSPMTSPRRATFTVGSPSSPPTPRTRRYSSGSRCSPSSQSPQDFH 315

Query: 243 RP 248
           +P
Sbjct: 316 QP 317


>SB_28070| Best HMM Match : RRM_1 (HMM E-Value=1.3e-07)
          Length = 694

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 28/109 (25%), Positives = 47/109 (43%), Gaps = 1/109 (0%)
 Frame = +2

Query: 5   SERFASWLLNKPQTAAVSVN-ANRLKSSTAAEPFLNGSSSAYVETMYNAWLADPNSVHAS 181
           + R   + LN+   A +S N A RL ++ ++ P +  S       + N  +  P+  H  
Sbjct: 34  AHRSLKFTLNRSMIARLSDNRAPRLGTNNSSYPGIRASWE-----INNKMVDSPSDFHHD 88

Query: 182 WDAFFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISA 328
           W    R A +    G A + PP   P   ++ P   LVP +   P ++A
Sbjct: 89  W----RRALDSLHQGHAPSRPPTPDPQPTHQNPSPGLVPIAIRDPDLTA 133


>SB_11758| Best HMM Match : DUF1518 (HMM E-Value=3.8)
          Length = 677

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 5/114 (4%)
 Frame = +2

Query: 203 ATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKIIDDHLAVQAI 382
           AT    P   YTP P      ++ VPL  + P+ G +P+ +  SP  E  +  +    A+
Sbjct: 234 ATPTHSPLRLYTPSPAGRSQLQSPVPLRLMSPALGQVPATNTRSPFLESPLMMNARSPAV 293

Query: 383 IRSYQARGHLAADVDPLGITTATLPELGMR-----APSSELIMRKYFNFDEADM 529
            RS    G  A D   L       PE+ +R     AP++  +++   N D   +
Sbjct: 294 FRSPPGGG--ARDESYLEGFEPLAPEICLRHTWQEAPTAVRLLKLLSNEDSKQL 345


>SB_48561| Best HMM Match : AAA (HMM E-Value=0)
          Length = 2021

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 236 TPPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPI 340
           TPPPN      +   LTSLVP+ G      AGS +
Sbjct: 386 TPPPNTVAGQTSAYQLTSLVPTQGTQVLSDAGSNV 420


>SB_34766| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 740

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 28/101 (27%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
 Frame = +2

Query: 338 INEKIIDDHLAVQAIIRSYQARGHLAADVDPLGITTATLPE-LGMRAPSSELIMRKYFNF 514
           + +K   D + ++AII  ++    LA +   LGIT     + LG     S L+M + F F
Sbjct: 523 LQDKSHFDQVEIEAIIEQFKT---LATE--DLGITREVFDQCLGPLGQQSNLVMEQMFKF 577

Query: 515 DEADMDRVFKLPSTTFIG--EKEKALPLREILNRLEQAYCN 631
            +++  +  K+P   F G   ++K    +E L ++ +AY N
Sbjct: 578 YDSNGSQEEKIPH-AFKGYDTEKKGYITKENLRQMFKAYFN 617


>SB_33505| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 120

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 191 FFRNATNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGM 313
           F R+  +  +P    +PPP   P   +  P  SL P++GGM
Sbjct: 35  FPRHQASFTEPSPDSSPPPPRTPVAPSTSPAVSLGPAAGGM 75


>SB_6144| Best HMM Match : SCP (HMM E-Value=4.6e-38)
          Length = 468

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 598 NSESFGASVLQQHRY*VHVHKFPGTMQLDPTAHG 699
           NS+ F  + L +H Y  H+H  P  MQLD    G
Sbjct: 311 NSQDFQVNALNRHNYYRHIHNAP-PMQLDKELSG 343


>SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1232

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 292 ERCERDLILVVWREIGRWRVCGAWLSSVCRIAEKCIPRRVYGVWVGEPCIVHGLD 128
           E C + + ++  R+ GR  VCG +  SVC+  E   P  +  V VG   +  G D
Sbjct: 355 ETCGKRVDMIATRKEGREHVCGEYKCSVCK--EVVPPDHLCYVTVGADALPKGGD 407


>SB_23757| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2834

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 18/67 (26%), Positives = 31/67 (46%)
 Frame = +2

Query: 284  TSLVPSSGGMPSISAGSPINEKIIDDHLAVQAIIRSYQARGHLAADVDPLGITTATLPEL 463
            TS+ PS+ GMPS++  + +   +        ++  S QA    A  V P  + T ++   
Sbjct: 1884 TSVTPSTQGMPSVAPSTQMTPSVASSTQVTPSVASSTQA----APSVTPSTLMTPSVTPS 1939

Query: 464  GMRAPSS 484
               APS+
Sbjct: 1940 TQAAPSA 1946


>SB_4881| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 295 HERCERDLILVVWREIGRWRVCGAWLSSVC 206
           H+ C++D +  +W     WR+ G W +  C
Sbjct: 129 HQVCQQDRVRQLWPNTREWRLPGPWENVQC 158


>SB_18456| Best HMM Match : Syja_N (HMM E-Value=1.9e-12)
          Length = 660

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/38 (42%), Positives = 20/38 (52%)
 Frame = +2

Query: 215 AQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISA 328
           +QPG  Y PPP L   +K   P  SL   S  +P IS+
Sbjct: 452 SQPGYKYRPPPRL---DKGHTPNLSLYLQSFFLPKISS 486


>SB_13838| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 84  PPRQNPSSMAPVQLTSRPCTMHGSPTQTPYTR 179
           P  Q P+S  P  LT+   T     TQ PY+R
Sbjct: 32  PTTQQPNSQRPNDLTANDPTTKQPTTQQPYSR 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,053,727
Number of Sequences: 59808
Number of extensions: 552963
Number of successful extensions: 1683
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1681
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)