Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0872
(723 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical ... 194 5e-50
Z78201-4|CAB01590.2| 911|Caenorhabditis elegans Hypothetical pr... 34 0.089
Z78019-10|CAE46691.1| 911|Caenorhabditis elegans Hypothetical p... 34 0.089
Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81017-3|CAB54257.1| 629|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z81017-2|CAB02672.1| 578|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z81017-1|CAB02669.1| 592|Caenorhabditis elegans Hypothetical pr... 29 2.5
U80221-1|AAB38367.1| 579|Caenorhabditis elegans F58A3.1b protein. 29 2.5
U80220-1|AAB38366.1| 592|Caenorhabditis elegans F58A3.1a protein. 29 2.5
Z81028-3|CAB02691.1| 545|Caenorhabditis elegans Hypothetical pr... 29 3.4
Z73910-4|CAA98136.1| 662|Caenorhabditis elegans Hypothetical pr... 29 4.4
U80841-1|AAB37939.1| 477|Caenorhabditis elegans Hypothetical pr... 28 5.9
U61954-6|AAK29811.2| 459|Caenorhabditis elegans Sand endocytosi... 28 7.8
AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily a... 28 7.8
>AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical
protein T22B11.5 protein.
Length = 1029
Score = 194 bits (473), Expect = 5e-50
Identities = 105/226 (46%), Positives = 138/226 (61%), Gaps = 3/226 (1%)
Frame = +2
Query: 35 KPQTAAVSVNANRLKSSTAA---EPFLNGSSSAYVETMYNAWLADPNSVHASWDAFFRNA 205
K +A ++ +R +S AA EPFLNGSSS Y+E MY AWL DP+SVH SWDA+FRN
Sbjct: 26 KSHISASTLVQHRNQSVAAAVKHEPFLNGSSSIYIEQMYEAWLQDPSSVHTSWDAYFRNV 85
Query: 206 TNGAQPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKIIDDHLAVQAII 385
GA PG A+ PP A V + ++ P+ + + + I DHL +Q +I
Sbjct: 86 EAGAGPGQAFQAPPATAYAGALGVSPAAAQVTTSSAPATRLDTNASVQSISDHLKIQLLI 145
Query: 386 RSYQARGHLAADVDPLGITTATLPELGMRAPSSELIMRKYFNFDEADMDRVFKLPSTTFI 565
RSYQ RGH AD+DPLGI +A L + P EL ++ E D+DR F LP TTFI
Sbjct: 146 RSYQTRGHNIADLDPLGINSADLDD--TIPPELEL---SFYGLGERDLDREFLLPPTTFI 200
Query: 566 GEKEKALPLREILNRLEQAYCNNIGIEFMFINSLEQCNWIRQRMGA 703
EK K+L LREIL RL+ YC + G+E+M +N+LEQ +WIR+R A
Sbjct: 201 SEK-KSLTLREILQRLKDIYCTSTGVEYMHLNNLEQQDWIRRRFEA 245
>Z78201-4|CAB01590.2| 911|Caenorhabditis elegans Hypothetical
protein ZK836.2 protein.
Length = 911
Score = 34.3 bits (75), Expect = 0.089
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 590 LREILNRLEQAYCNNIGIEFMFINSLEQCNWIRQ 691
L ++ +L YC IEFM IN+ E+ WI Q
Sbjct: 105 LHDLAEQLRHIYCGPTAIEFMHINNWEERQWISQ 138
>Z78019-10|CAE46691.1| 911|Caenorhabditis elegans Hypothetical
protein ZK836.2 protein.
Length = 911
Score = 34.3 bits (75), Expect = 0.089
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +2
Query: 590 LREILNRLEQAYCNNIGIEFMFINSLEQCNWIRQ 691
L ++ +L YC IEFM IN+ E+ WI Q
Sbjct: 105 LHDLAEQLRHIYCGPTAIEFMHINNWEERQWISQ 138
>Z54284-1|CAA91059.1| 2198|Caenorhabditis elegans Hypothetical
protein D2085.1 protein.
Length = 2198
Score = 30.7 bits (66), Expect = 1.1
Identities = 11/41 (26%), Positives = 20/41 (48%)
Frame = +2
Query: 125 YVETMYNAWLADPNSVHASWDAFFRNATNGAQPGAAYTPPP 247
Y+ + + + DP+S+ A W A F N + G ++ P
Sbjct: 292 YITSQNHGYAVDPDSLPADWKALFTNENDKTNEGIVHSSKP 332
>Z81017-3|CAB54257.1| 629|Caenorhabditis elegans Hypothetical
protein F58A3.1c protein.
Length = 629
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 239 PPPNLAPYN-KNEVPLTSLVPSSGGMP 316
PPPNL P+ N++P + + P G MP
Sbjct: 529 PPPNLPPHTMSNQMPNSRMPPMQGQMP 555
>Z81017-2|CAB02672.1| 578|Caenorhabditis elegans Hypothetical
protein F58A3.1b protein.
Length = 578
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 239 PPPNLAPYN-KNEVPLTSLVPSSGGMP 316
PPPNL P+ N++P + + P G MP
Sbjct: 478 PPPNLPPHTMSNQMPNSRMPPMQGQMP 504
>Z81017-1|CAB02669.1| 592|Caenorhabditis elegans Hypothetical
protein F58A3.1a protein.
Length = 592
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 239 PPPNLAPYN-KNEVPLTSLVPSSGGMP 316
PPPNL P+ N++P + + P G MP
Sbjct: 492 PPPNLPPHTMSNQMPNSRMPPMQGQMP 518
>U80221-1|AAB38367.1| 579|Caenorhabditis elegans F58A3.1b protein.
Length = 579
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 239 PPPNLAPYN-KNEVPLTSLVPSSGGMP 316
PPPNL P+ N++P + + P G MP
Sbjct: 479 PPPNLPPHTMSNQMPNSRMPPMQGQMP 505
>U80220-1|AAB38366.1| 592|Caenorhabditis elegans F58A3.1a protein.
Length = 592
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/27 (44%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = +2
Query: 239 PPPNLAPYN-KNEVPLTSLVPSSGGMP 316
PPPNL P+ N++P + + P G MP
Sbjct: 492 PPPNLPPHTMSNQMPNSRMPPMQGQMP 518
>Z81028-3|CAB02691.1| 545|Caenorhabditis elegans Hypothetical
protein B0365.6 protein.
Length = 545
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 2/61 (3%)
Frame = +2
Query: 74 LKSSTAAEPFLNGSSSAYVETMYNAWLAD-PNS-VHASWDAFFRNATNGAQPGAAYTPPP 247
L+ ++A+ + +++ ++ ++ +A+ PN V+ W+A F+ +T+ QP TP P
Sbjct: 371 LQGNSASNQWYTSTTNT-MKVVFRPCIANCPNDGVNYRWEADFKPSTDVTQPPVTVTPNP 429
Query: 248 N 250
N
Sbjct: 430 N 430
>Z73910-4|CAA98136.1| 662|Caenorhabditis elegans Hypothetical
protein M117.4 protein.
Length = 662
Score = 28.7 bits (61), Expect = 4.4
Identities = 24/72 (33%), Positives = 33/72 (45%)
Frame = +2
Query: 218 QPGAAYTPPPNLAPYNKNEVPLTSLVPSSGGMPSISAGSPINEKIIDDHLAVQAIIRSYQ 397
+P A PPP+ AP PL++ VPS+G P SA P ++K+ + RS
Sbjct: 161 KPLAKPLPPPSAAP--PPVAPLSAPVPSTGAPP--SAVPPADKKMSKQSTRDKKSGRSTD 216
Query: 398 ARGHLAADVDPL 433
H DV L
Sbjct: 217 RNIHKKKDVAAL 228
>U80841-1|AAB37939.1| 477|Caenorhabditis elegans Hypothetical
protein C13A10.1 protein.
Length = 477
Score = 28.3 bits (60), Expect = 5.9
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Frame = -3
Query: 463 QFRKRGRRDAERVHIGRQVTASLVT--PDDSLHGE--VIVDYLLVYRGTC*NRRHSAARW 296
QF +R RRD++ + IG + TAS P L E V +D RG+ R + RW
Sbjct: 11 QFERRHRRDSDTIAIGNRETASKTVRFPSAQLTNEDFVRIDSWRHDRGS--EERENGRRW 68
Query: 295 HE 290
+
Sbjct: 69 FD 70
>U61954-6|AAK29811.2| 459|Caenorhabditis elegans Sand endocytosis
protein familyprotein 1 protein.
Length = 459
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = -1
Query: 585 SAFSFSPINVVEGSLNTLSMSASSKLKYFLMMSSELGA 472
S++ SPIN+V+ S++ + M+ S + M+S LGA
Sbjct: 172 SSWRASPINLVDSSISAIPMNPSDREFLSTTMASCLGA 209
>AC024763-4|AAF60519.1| 1347|Caenorhabditis elegans Temporarily
assigned gene nameprotein 168 protein.
Length = 1347
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 119 SAYVETMYNAWLAD-PNSVHASWDAFFRNATNGAQPGA 229
++Y + N+ PNS H+ + F R+A+ GAQP A
Sbjct: 635 TSYAANLQNSMQQSAPNSGHSGYATFDRSASLGAQPQA 672
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,132,479
Number of Sequences: 27780
Number of extensions: 406085
Number of successful extensions: 1433
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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