Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0872
(723 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter... 25 0.96
AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter... 23 2.2
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul... 23 2.2
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A... 23 2.2
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 23 2.9
EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein. 22 5.1
EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein. 22 5.1
DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex det... 22 6.7
DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex det... 22 6.7
DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex det... 22 6.7
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 22 6.7
AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein. 22 6.7
>AY395071-1|AAQ96727.1| 646|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 646
Score = 24.6 bits (51), Expect = 0.96
Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = -1
Query: 378 ACTAR*SSI-IFSFIGEPAEIEGIPPLDGTSDVSGTSFLLY 259
+CT+ S I IFS +G A + P D + G +FL+Y
Sbjct: 376 SCTSMLSGIVIFSVVGFMAHEQQKPVADVAASGPGLAFLVY 416
>AY395072-1|AAQ96728.1| 593|Apis mellifera GABA neurotransmitter
transporter-1B protein.
Length = 593
Score = 23.4 bits (48), Expect = 2.2
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = -1
Query: 378 ACTAR*SSI-IFSFIGEPAEIEGIPPLDGTSDVSGTSFLLY 259
+CT+ S I IFS +G A + P D G +FL+Y
Sbjct: 323 SCTSMLSGIVIFSVVGFMAHEQQKPVADVAVSGPGLAFLVY 363
>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
AbsCAM-Ig7B protein.
Length = 1923
Score = 23.4 bits (48), Expect = 2.2
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 562 YRGKRKSAPVERNSESFGASVLQQHRY*VHVHK 660
Y G R P++ + E+ + Q+ RY +HK
Sbjct: 1639 YLGDRMQRPMKESQENQQNAETQRERYYATIHK 1671
>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
AbsCAM-Ig7A protein.
Length = 1919
Score = 23.4 bits (48), Expect = 2.2
Identities = 10/33 (30%), Positives = 17/33 (51%)
Frame = +1
Query: 562 YRGKRKSAPVERNSESFGASVLQQHRY*VHVHK 660
Y G R P++ + E+ + Q+ RY +HK
Sbjct: 1635 YLGDRMQRPMKESQENQQNAETQRERYYATIHK 1667
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 23.0 bits (47), Expect = 2.9
Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 2/57 (3%)
Frame = +3
Query: 84 PPRQNPSSMAPVQL--TSRPCTMHGSPTQTPYTRLGMHFSAMRQTELSQAPHTRHRP 248
PP+QNP PV T+ ++ TP T GM + E + H ++P
Sbjct: 822 PPQQNPYMFLPVSYMSTTMAGVIYPPVIGTPST--GMMYKPFLIPEQTSISHENNQP 876
>EF625898-1|ABR45905.1| 686|Apis mellifera hexamerin protein.
Length = 686
Score = 22.2 bits (45), Expect = 5.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 98 VLPRWSSSAYWHLLKPRQSVVY 33
+LP W SS+ +H+ K + +Y
Sbjct: 240 MLPYWMSSSQYHMPKEIRGQLY 261
>EF589162-1|ABQ84439.1| 686|Apis mellifera hexamerin 70c protein.
Length = 686
Score = 22.2 bits (45), Expect = 5.1
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = -2
Query: 98 VLPRWSSSAYWHLLKPRQSVVY 33
+LP W SS+ +H+ K + +Y
Sbjct: 240 MLPYWMSSSQYHMPKEIRGQLY 261
>DQ325124-1|ABD14138.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 6.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 605 NRLEQAYCNNIGIEFMFINSLEQ 673
N ++ YCNN + IN +EQ
Sbjct: 94 NNYKKLYCNNYKKLYYNINYIEQ 116
>DQ325123-1|ABD14137.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 6.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 605 NRLEQAYCNNIGIEFMFINSLEQ 673
N ++ YCNN + IN +EQ
Sbjct: 94 NNYKKLYCNNYKKLYYNINYIEQ 116
>DQ325122-1|ABD14136.1| 179|Apis mellifera complementary sex
determiner protein.
Length = 179
Score = 21.8 bits (44), Expect = 6.7
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +2
Query: 605 NRLEQAYCNNIGIEFMFINSLEQ 673
N ++ YCNN + IN +EQ
Sbjct: 94 NNYKKLYCNNYRKLYYNINYIEQ 116
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.8 bits (44), Expect = 6.7
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +2
Query: 236 TPPPNLAPYNKNEVPLTSLVPSSGGMPSIS 325
TP ++ + VP+TSL SS + SI+
Sbjct: 841 TPTTSVISMSGTTVPITSLPASSTSINSIT 870
>AB270697-1|BAF75928.1| 735|Apis mellifera FoxP protein protein.
Length = 735
Score = 21.8 bits (44), Expect = 6.7
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 81 APPRQNPSSM 110
APP QNPS M
Sbjct: 54 APPSQNPSQM 63
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,531
Number of Sequences: 438
Number of extensions: 4887
Number of successful extensions: 16
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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