Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0870
         (697 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY217747-1|AAP45005.1|  246|Apis mellifera short-chain dehydroge...    49   5e-08
AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    22   6.4  

>AY217747-1|AAP45005.1|  246|Apis mellifera short-chain
           dehydrogenase/reductase protein.
          Length = 246

 Score = 48.8 bits (111), Expect = 5e-08
 Identities = 27/91 (29%), Positives = 54/91 (59%)
 Frame = +3

Query: 342 DKVVIITGGANGIGESFVQNLLEEDIKFIAILDTDVEAGEMLQDKMMTEYANSKVKFIQC 521
           D+V ++TG  +GIG+  ++ L+ + +K I I    V+  + L +++ ++    K+  +QC
Sbjct: 7   DEVALVTGANSGIGKCLIECLVGKGMKVIGIAP-QVDKMKTLVEELKSK--PGKLVPLQC 63

Query: 522 DVTVDEELFGAFDDVVKEIGYIDLVINNAGI 614
           D++   ++    + V K +G ID++INNA I
Sbjct: 64  DLSNQNDILKVIEWVEKNLGAIDILINNATI 94


>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 11/42 (26%), Positives = 20/42 (47%)
 Frame = +3

Query: 315 TIIEMYDLKDKVVIITGGANGIGESFVQNLLEEDIKFIAILD 440
           TI+ M D K   +I+   ++        N  + D K+I ++D
Sbjct: 202 TIVYMADDKGDALIVYQNSDESFHRLTSNTFDYDPKYIKMMD 243


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 167,984
Number of Sequences: 438
Number of extensions: 3181
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21317625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)