Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0869
(722 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17) 31 0.95
SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2) 30 2.2
SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33) 30 2.2
SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8) 29 5.0
SB_12804| Best HMM Match : TF_Otx (HMM E-Value=7) 29 5.0
SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17) 29 5.0
SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55) 29 5.0
SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7) 28 6.7
SB_933| Best HMM Match : ExoD (HMM E-Value=6) 28 8.8
>SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)
Length = 415
Score = 31.1 bits (67), Expect = 0.95
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = -1
Query: 260 GSIFPDDALSVSPASNHHL-IHRIRFLRACRERDVGIIRCSDFEL 129
GSIF D VS NH L + R + L C+ER++G D EL
Sbjct: 303 GSIFHDKTFIVSDLRNHVLRVFRQKGLTICKERNIGQRGGKDGEL 347
>SB_51558| Best HMM Match : DSS1_SEM1 (HMM E-Value=0.2)
Length = 878
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +3
Query: 183 QESDPMYEVMIGGWGNAKSVIRKN-RTKPDKVEIESPGILNGG 308
Q+ D MYEV+I + +RK+ R+ D E E PGI+ GG
Sbjct: 766 QQQDQMYEVLI------HNALRKSFRSDEDDDENEEPGIIRGG 802
>SB_1018| Best HMM Match : adh_short (HMM E-Value=2.1e-33)
Length = 717
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -1
Query: 605 IYFCGMSCEGNVAVVRSAVIEFQRTRGDRSK 513
+Y C SCE N + +AV F +TR R+K
Sbjct: 224 LYLCHESCEENAGLFETAVGWFSQTRWQRTK 254
>SB_2820| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1140
Score = 29.9 bits (64), Expect = 2.2
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = +3
Query: 555 GPHNCHVSLTTHPAEVDPMYEIIIGGWENTQSVIRYCRQKPD 680
G H +++ + E PM ++ G +++Q IRYC K D
Sbjct: 981 GTHPNELNVQLYDPESKPMKYTVVRGRDSSQCFIRYCDDKGD 1022
>SB_7118| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 234
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +3
Query: 177 GPQESDPMYEVMIGGWGNAKSVIRKNRT-KPDKVEIESPGILNGGEY 314
GP + + +G W S R +T P KV + PGI NG Y
Sbjct: 84 GPTQDCDVNSGEVGPWKEVPSCSRVGQTGDPSKVRVYGPGIENGLRY 130
>SB_27051| Best HMM Match : DUF827 (HMM E-Value=1.8)
Length = 283
Score = 28.7 bits (61), Expect = 5.0
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 7/70 (10%)
Frame = +3
Query: 117 SGSVQFKVRAANDAHIALTTGPQESDPMYEVMI-------GGWGNAKSVIRKNRTKPDKV 275
SGSV + V A +H L + + P+Y + + G V+R +P+K
Sbjct: 84 SGSVNYFVAPAESSHSQLVLIEELNQPIYSLTLKIIICLSETTGTLPLVLRNALPRPEKY 143
Query: 276 EIESPGILNG 305
SPG L G
Sbjct: 144 PENSPGTLTG 153
>SB_12804| Best HMM Match : TF_Otx (HMM E-Value=7)
Length = 245
Score = 28.7 bits (61), Expect = 5.0
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +1
Query: 325 GFVGIAALSPLDARVKLFHSYPGLIPNLSQFTTSESAQAGVPQAPGKSKMERNSI 489
G G L P+ S G +P+L Q S + +P +PG+ + R ++
Sbjct: 93 GVPGAPTLVPIQRPAPSVPSPTGRVPHLDQIPHVPSGPSSLPSSPGEPLISRGTV 147
>SB_57207| Best HMM Match : Transposase_22 (HMM E-Value=0.17)
Length = 262
Score = 28.7 bits (61), Expect = 5.0
Identities = 18/79 (22%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
Frame = +1
Query: 358 DARVKLFHSYPGLIPNLSQFTTSESAQA-GVPQAPGKSKMERNSILRTG*SISLDLSPLV 534
+ R K+ G + L Q++ + + G+PQ K +R I I + ++P
Sbjct: 93 EERGKIAVEVDGKLDGLEQYSRRNNIRIDGIPQTEEKEDTDRLIIETIKAKIGIVIAPAD 152
Query: 535 LWNSITADRTTATFPSQLI 591
+W S + + P Q+I
Sbjct: 153 IWRSHRVGHSKGSTPRQII 171
>SB_25304| Best HMM Match : HDV_ag (HMM E-Value=0.55)
Length = 2153
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/28 (39%), Positives = 20/28 (71%), Gaps = 1/28 (3%)
Frame = +1
Query: 406 LSQFTTSESAQAGVPQAPGK-SKMERNS 486
L +FT + +++ G+P PGK S++ +NS
Sbjct: 448 LQEFTQTHASKGGIPSTPGKTSEVSKNS 475
>SB_28276| Best HMM Match : Cerato-platanin (HMM E-Value=6.7)
Length = 225
Score = 28.3 bits (60), Expect = 6.7
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 273 VEIESPGILNGGEYRGFWVRWDSGIISAGREGEAIPFISWSDPEPFPV-YYV 425
+ I + GI + + FWV + S + G I W+DP+P V YY+
Sbjct: 1 LNIATSGITSAEKRMVFWVDFRSANLVLGSGATVIA--QWTDPDPLEVGYYI 50
>SB_933| Best HMM Match : ExoD (HMM E-Value=6)
Length = 555
Score = 27.9 bits (59), Expect = 8.8
Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 265 PIRLKLKAPEFLTEGNIVVFGFVG-IAALSPLDARVKLFHSYPG 393
P ++ K P L +G I+ GF+G ++AL ++LF G
Sbjct: 100 PYVIRPKGPRLLRQGTIMKAGFIGLVSALGVYACNLELFRRCAG 143
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,673,850
Number of Sequences: 59808
Number of extensions: 552583
Number of successful extensions: 1530
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1528
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -