Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0868
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1571 - 27935756-27935950,27936048-27936199,27936294-279364...    29   3.0  
01_01_0180 + 1533219-1533536,1533658-1533825,1535404-1535475,153...    28   7.0  

>08_02_1571 -
           27935756-27935950,27936048-27936199,27936294-27936403,
           27936845-27937050,27937212-27937295,27937367-27937525,
           27937621-27937728,27938103-27938278,27938376-27938462,
           27938546-27938657,27938737-27938817,27938890-27938943,
           27939107-27939183,27939262-27939331,27939552-27939666,
           27939840-27939937,27940041-27940179,27940267-27940868,
           27941270-27941399,27941471-27941529
          Length = 937

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 630 FQKDLSGKALSIST*LSVSIQMTFRHLHKLNSLC 731
           FQ DL+ K   +ST L+ SI    +HL  + +LC
Sbjct: 558 FQADLASKLDILSTTLATSIDQQNKHLKSVENLC 591


>01_01_0180 +
           1533219-1533536,1533658-1533825,1535404-1535475,
           1536174-1536179,1536228-1536440,1537434-1537700,
           1537947-1538267
          Length = 454

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 15/45 (33%), Positives = 22/45 (48%)
 Frame = +2

Query: 2   PRPSEPKPTSPARGAPCRSTNEALARRGRHGTTVAYIVDDSGSDH 136
           P P E +P+SP+    C   +    RRG   + VA + D +  DH
Sbjct: 6   PPPPEEEPSSPSLRLRCAVQHYEWGRRG-EASLVARLSDANADDH 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,056,861
Number of Sequences: 37544
Number of extensions: 306531
Number of successful extensions: 734
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)