Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0867
(719 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI00015B4820 Cluster: PREDICTED: similar to pol-like p... 51 2e-05
UniRef50_UPI00015B4772 Cluster: PREDICTED: similar to pol-like p... 48 3e-04
UniRef50_UPI00015B47A9 Cluster: PREDICTED: similar to pol-like p... 46 0.001
UniRef50_Q868R6 Cluster: Reverse transcriptase; n=1; Anopheles g... 44 0.004
UniRef50_Q868S6 Cluster: Reverse transcriptase; n=2; Culicidae|R... 42 0.020
UniRef50_O18558 Cluster: Lian-Aa1 retrotransposon protein; n=1; ... 41 0.035
UniRef50_Q24363 Cluster: Putative ORF2; n=2; melanogaster subgro... 39 0.11
UniRef50_UPI00015B43EC Cluster: PREDICTED: similar to pol-like p... 38 0.19
UniRef50_Q23MN2 Cluster: Zinc finger, C2H2 type family protein; ... 38 0.33
UniRef50_Q76IK7 Cluster: Pol-like protein; n=1; Ciona intestinal... 37 0.44
UniRef50_A2QSQ0 Cluster: Remark: Mars; n=34; Pezizomycotina|Rep:... 37 0.58
UniRef50_UPI00015B4A79 Cluster: PREDICTED: similar to Lian-Aa1 r... 36 0.76
UniRef50_UPI0000D5790F Cluster: PREDICTED: similar to RNA-direct... 36 0.76
UniRef50_O65244 Cluster: F21E10.5 protein; n=7; Arabidopsis thal... 36 0.76
UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori... 36 0.76
UniRef50_Q9LR94 Cluster: T23E23.16; n=1; Arabidopsis thaliana|Re... 36 1.0
UniRef50_Q868S2 Cluster: Reverse transcriptase; n=4; Anopheles g... 36 1.0
UniRef50_Q868S4 Cluster: Reverse transcriptase; n=1; Anopheles g... 35 2.3
UniRef50_Q9Y1H5 Cluster: Pol; n=64; root|Rep: Pol - Dictyosteliu... 34 3.1
UniRef50_Q9N9Z1 Cluster: Endonuclease/reverse transcriptase; n=1... 34 3.1
UniRef50_Q55F53 Cluster: Putative uncharacterized protein; n=5; ... 34 3.1
UniRef50_UPI00015B4F8A Cluster: PREDICTED: similar to lachesin, ... 34 4.1
UniRef50_O64612 Cluster: Putative reverse transcriptase; n=1; Ar... 33 5.4
UniRef50_Q08915 Cluster: Putative uncharacterized protein YOR392... 33 5.4
UniRef50_UPI0000D5776D Cluster: PREDICTED: similar to Hypothetic... 33 9.4
UniRef50_Q9LJP6 Cluster: Non-LTR retroelement reverse transcript... 33 9.4
>UniRef50_UPI00015B4820 Cluster: PREDICTED: similar to pol-like
protein; n=1; Nasonia vitripennis|Rep: PREDICTED: similar
to pol-like protein - Nasonia vitripennis
Length = 1050
Score = 51.2 bits (117), Expect = 2e-05
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 4/66 (6%)
Frame = -3
Query: 600 LRLGHCRFNAHLFRINVLSSPVCNYCNNDIQSLDHIFFSCSAFSLDRLVFIDRL----LC 433
+R GH A L RINV+ P C C + Q +H+F+ C + R FI++L LC
Sbjct: 958 IRSGHYNLGASLSRINVVPDPKCQ-CGDPHQDANHVFWQCPLYDESRTKFIEQLLKSKLC 1016
Query: 432 IYGNVE 415
+YG+++
Sbjct: 1017 VYGHIQ 1022
>UniRef50_UPI00015B4772 Cluster: PREDICTED: similar to pol-like
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to pol-like protein - Nasonia vitripennis
Length = 751
Score = 47.6 bits (108), Expect = 3e-04
Identities = 27/84 (32%), Positives = 40/84 (47%)
Frame = -3
Query: 690 KYFQIMYQSHVPYLGSGSPLIGGFIQPSVALRLGHCRFNAHLFRINVLSSPVCNYCNNDI 511
+YF++ +V S L +I R H A LFR+N++SS C C D
Sbjct: 632 EYFEMYRTENVKPWFHKSSLPRDYIVTINRCRADHYNLAASLFRVNIVSSAKCE-CGYDS 690
Query: 510 QSLDHIFFSCSAFSLDRLVFIDRL 439
+ L+HI ++C F R V + RL
Sbjct: 691 EDLNHILWNCPIFEAQRTVLLSRL 714
>UniRef50_UPI00015B47A9 Cluster: PREDICTED: similar to pol-like
protein; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to pol-like protein - Nasonia vitripennis
Length = 819
Score = 45.6 bits (103), Expect = 0.001
Identities = 16/54 (29%), Positives = 34/54 (62%)
Frame = -3
Query: 600 LRLGHCRFNAHLFRINVLSSPVCNYCNNDIQSLDHIFFSCSAFSLDRLVFIDRL 439
+R GH NA L++ ++ + C C ++++S++H+F+SC ++L R + + L
Sbjct: 737 IRSGHTSLNASLYKHKIVDTDKCE-CGDEVESVEHVFWSCKRYNLQRDIMLKEL 789
>UniRef50_Q868R6 Cluster: Reverse transcriptase; n=1; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 1022
Score = 44.0 bits (99), Expect = 0.004
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = -3
Query: 591 GHCRFNAHLFRINVLSSPVCNYCNNDIQSLDHIFFSCSAFSLDRL 457
GH F +HL R+ + SPVC C ++ Q+ +H F C + L RL
Sbjct: 900 GHGFFRSHLHRMGYVPSPVCPACGDENQTAEHTIFICGMYLLTRL 944
>UniRef50_Q868S6 Cluster: Reverse transcriptase; n=2; Culicidae|Rep:
Reverse transcriptase - Anopheles gambiae (African
malaria mosquito)
Length = 1049
Score = 41.5 bits (93), Expect = 0.020
Identities = 17/45 (37%), Positives = 27/45 (60%)
Frame = -3
Query: 591 GHCRFNAHLFRINVLSSPVCNYCNNDIQSLDHIFFSCSAFSLDRL 457
GH F ++L R N SS C C ++ +++DH+ F C F+ +RL
Sbjct: 952 GHGCFRSYLHRFNRASSSRCPACKDEDETVDHVMFHCPRFAEERL 996
>UniRef50_O18558 Cluster: Lian-Aa1 retrotransposon protein; n=1; Aedes
aegypti|Rep: Lian-Aa1 retrotransposon protein - Aedes
aegypti (Yellowfever mosquito)
Length = 1189
Score = 40.7 bits (91), Expect = 0.035
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -3
Query: 591 GHCRFNAHLFRINVLSSPVCNYCNNDIQSLDHIFFSCSAFSLDRLVFIDRLL 436
GHCR N H+ I S VC+ C++D + H+ +C FS R + + L
Sbjct: 1113 GHCRLNYHMANIQRADSFVCDSCDSDYGTSYHLICNCPVFSQMRFQLLGKHL 1164
>UniRef50_Q24363 Cluster: Putative ORF2; n=2; melanogaster
subgroup|Rep: Putative ORF2 - Drosophila melanogaster
(Fruit fly)
Length = 1219
Score = 39.1 bits (87), Expect = 0.11
Identities = 20/42 (47%), Positives = 24/42 (57%)
Frame = -3
Query: 606 VALRLGHCRFNAHLFRINVLSSPVCNYCNNDIQSLDHIFFSC 481
+ LRLGH H +N S P C +C DI SL+HIF SC
Sbjct: 1136 IRLRLGHTNIT-HQHYLNPNSIPTCPFCQGDI-SLNHIFNSC 1175
>UniRef50_UPI00015B43EC Cluster: PREDICTED: similar to pol-like
protein; n=1; Nasonia vitripennis|Rep: PREDICTED: similar
to pol-like protein - Nasonia vitripennis
Length = 1119
Score = 38.3 bits (85), Expect = 0.19
Identities = 15/47 (31%), Positives = 27/47 (57%)
Frame = -3
Query: 600 LRLGHCRFNAHLFRINVLSSPVCNYCNNDIQSLDHIFFSCSAFSLDR 460
+R GH N+ LF+ + + C C I +++HIF++C+ F+ R
Sbjct: 1030 IRCGHSSLNSSLFKHKITDTDKCK-CGEAIDTIEHIFWNCNLFNEQR 1075
>UniRef50_Q23MN2 Cluster: Zinc finger, C2H2 type family protein;
n=1; Tetrahymena thermophila SB210|Rep: Zinc finger,
C2H2 type family protein - Tetrahymena thermophila SB210
Length = 867
Score = 37.5 bits (83), Expect = 0.33
Identities = 21/63 (33%), Positives = 27/63 (42%)
Frame = -3
Query: 585 CRFNAHLFRINVLSSPVCNYCNNDIQSLDHIFFSCSAFSLDRLVFIDRLLCIYGNVEDIP 406
C + F N+ S P+CN N D+ D F LD L D+ IY E+I
Sbjct: 33 CHYKMRTFTQNI-SCPLCNSLNGDLIITDDFNADFDDFELDGLEVFDQKAGIYATTEEIY 91
Query: 405 HTL 397
H L
Sbjct: 92 HEL 94
>UniRef50_Q76IK7 Cluster: Pol-like protein; n=1; Ciona
intestinalis|Rep: Pol-like protein - Ciona intestinalis
(Transparent sea squirt)
Length = 1235
Score = 37.1 bits (82), Expect = 0.44
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = -3
Query: 606 VALRLGHCRFNAHLFRINVLSSPVCNYCNNDIQSLDHIFFSC 481
+ L+L NA LF ++ SP C +CN + SL H+F C
Sbjct: 1106 IKLKLRAVVTNACLFNFGMIDSPNCVFCNTETDSLVHMFTKC 1147
>UniRef50_A2QSQ0 Cluster: Remark: Mars; n=34; Pezizomycotina|Rep:
Remark: Mars - Aspergillus niger
Length = 1652
Score = 36.7 bits (81), Expect = 0.58
Identities = 17/61 (27%), Positives = 29/61 (47%)
Frame = -3
Query: 600 LRLGHCRFNAHLFRINVLSSPVCNYCNNDIQSLDHIFFSCSAFSLDRLVFIDRLLCIYGN 421
LR G R N +L+RIN + C C ++++H F C ++ R+ + GN
Sbjct: 1555 LRTGMARLNGYLYRINAAQTDQCA-CGQARETVEHFLFRCRKWTTQRIALLQCTRTQRGN 1613
Query: 420 V 418
+
Sbjct: 1614 L 1614
>UniRef50_UPI00015B4A79 Cluster: PREDICTED: similar to Lian-Aa1
retrotransposon protein; n=1; Nasonia vitripennis|Rep:
PREDICTED: similar to Lian-Aa1 retrotransposon protein -
Nasonia vitripennis
Length = 493
Score = 36.3 bits (80), Expect = 0.76
Identities = 16/56 (28%), Positives = 26/56 (46%)
Frame = -3
Query: 600 LRLGHCRFNAHLFRINVLSSPVCNYCNNDIQSLDHIFFSCSAFSLDRLVFIDRLLC 433
L +GH H I ++SP C +CN +S H+ C+A + R + + C
Sbjct: 416 LIIGHGTLGYHQHIIGPVNSPTCRWCNQSEESSAHVLCHCTALAEKRHRVLGMMTC 471
>UniRef50_UPI0000D5790F Cluster: PREDICTED: similar to RNA-directed
DNA polymerase from mobile element jockey (Reverse
transcriptase); n=1; Tribolium castaneum|Rep: PREDICTED:
similar to RNA-directed DNA polymerase from mobile
element jockey (Reverse transcriptase) - Tribolium
castaneum
Length = 932
Score = 36.3 bits (80), Expect = 0.76
Identities = 18/60 (30%), Positives = 28/60 (46%)
Frame = -3
Query: 591 GHCRFNAHLFRINVLSSPVCNYCNNDIQSLDHIFFSCSAFSLDRLVFIDRLLCIYGNVED 412
GH F +L RI + C +C D +H F C F +RL ++ + L + N E+
Sbjct: 835 GHGCFGTYLHRIGKTADERCWFCGEDRDDPEHTLFLCERFDGERLEYMKKTL-TWPNAEE 893
>UniRef50_O65244 Cluster: F21E10.5 protein; n=7; Arabidopsis
thaliana|Rep: F21E10.5 protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 928
Score = 36.3 bits (80), Expect = 0.76
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = -3
Query: 555 NVLSSPVCNYCNNDIQSLDHIFFSCS 478
N+ SS C CNN++++ DH+FFSC+
Sbjct: 796 NLQSSVGCVLCNNNLETRDHLFFSCA 821
>UniRef50_Q868Q4 Cluster: Reverse transcriptase; n=3; Bombyx mori|Rep:
Reverse transcriptase - Bombyx mori (Silk moth)
Length = 1076
Score = 36.3 bits (80), Expect = 0.76
Identities = 15/56 (26%), Positives = 29/56 (51%)
Frame = -3
Query: 606 VALRLGHCRFNAHLFRINVLSSPVCNYCNNDIQSLDHIFFSCSAFSLDRLVFIDRL 439
V + GH F +L RI + C++C +D+ + +H C A+ + R V + ++
Sbjct: 953 VQVLTGHGCFGKYLRRIGAEPTTRCHHCGHDLDTAEHTLAVCPAWEVQRRVLVAKI 1008
>UniRef50_Q9LR94 Cluster: T23E23.16; n=1; Arabidopsis thaliana|Rep:
T23E23.16 - Arabidopsis thaliana (Mouse-ear cress)
Length = 653
Score = 35.9 bits (79), Expect = 1.0
Identities = 12/21 (57%), Positives = 17/21 (80%)
Frame = -3
Query: 543 SPVCNYCNNDIQSLDHIFFSC 481
SP C CNN+I++ +H+FFSC
Sbjct: 525 SPTCVLCNNNIETRNHLFFSC 545
>UniRef50_Q868S2 Cluster: Reverse transcriptase; n=4; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 1201
Score = 35.9 bits (79), Expect = 1.0
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -3
Query: 591 GHCRFNAHLFRINVLSSPVCNYCNNDIQSLDHIFFSCSAFSLDR 460
GH F HL + + SSP C C +S +H F C F R
Sbjct: 997 GHGFFREHLCGMQLTSSPDCTRCPGVAESAEHAMFECPRFDSTR 1040
>UniRef50_Q868S4 Cluster: Reverse transcriptase; n=1; Anopheles
gambiae|Rep: Reverse transcriptase - Anopheles gambiae
(African malaria mosquito)
Length = 973
Score = 34.7 bits (76), Expect = 2.3
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = -3
Query: 588 HCRFNAHLFRINVLSSPVCNYCNNDIQSLDHIFFSCSAFSLDR 460
H F ++L + SSP C C + ++S +H+ F C F+ +R
Sbjct: 890 HGCFRSYLHKYRHASSPDCPACVSIVESTEHVLFHCPRFAEER 932
>UniRef50_Q9Y1H5 Cluster: Pol; n=64; root|Rep: Pol - Dictyostelium
discoideum (Slime mold)
Length = 1275
Score = 34.3 bits (75), Expect = 3.1
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -3
Query: 582 RFNAHLFRINVLSSPVCNYCNNDIQS--LDHIFFSC 481
RF+A IN L + VC CNN++ + H+FF+C
Sbjct: 1040 RFHARCLPINHLHNKVCPICNNEMNNDPYGHLFFNC 1075
>UniRef50_Q9N9Z1 Cluster: Endonuclease/reverse transcriptase; n=1;
Drosophila melanogaster|Rep: Endonuclease/reverse
transcriptase - Drosophila melanogaster (Fruit fly)
Length = 989
Score = 34.3 bits (75), Expect = 3.1
Identities = 13/43 (30%), Positives = 23/43 (53%)
Frame = -3
Query: 588 HCRFNAHLFRINVLSSPVCNYCNNDIQSLDHIFFSCSAFSLDR 460
H F +L R + + C YC + +++ +HI CS F+ +R
Sbjct: 895 HGCFRGYLCRFRHVDTAQCLYCTDAVETAEHILLHCSRFAEER 937
>UniRef50_Q55F53 Cluster: Putative uncharacterized protein; n=5;
Dictyostelium discoideum AX4|Rep: Putative
uncharacterized protein - Dictyostelium discoideum AX4
Length = 498
Score = 34.3 bits (75), Expect = 3.1
Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -3
Query: 582 RFNAHLFRINVLSSPVCNYCNNDIQS--LDHIFFSC 481
RF+A IN L + VC CNN++ + H+FF+C
Sbjct: 415 RFHARCLPINHLHNKVCPICNNEMNNDPYGHLFFNC 450
>UniRef50_UPI00015B4F8A Cluster: PREDICTED: similar to lachesin,
putative; n=1; Nasonia vitripennis|Rep: PREDICTED:
similar to lachesin, putative - Nasonia vitripennis
Length = 742
Score = 33.9 bits (74), Expect = 4.1
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = -3
Query: 591 GHCRFNAHLFRINVLSSPVCNYCNNDIQSLDHIFFSCSAFS 469
GH R HL+ + + S C +C + ++ H+ C AF+
Sbjct: 279 GHWRVGYHLWNLRLRDSGNCRWCEFETETTSHLLCECPAFA 319
>UniRef50_O64612 Cluster: Putative reverse transcriptase; n=1;
Arabidopsis thaliana|Rep: Putative reverse transcriptase
- Arabidopsis thaliana (Mouse-ear cress)
Length = 1412
Score = 33.5 bits (73), Expect = 5.4
Identities = 20/41 (48%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = -3
Query: 543 SPVCNYCNNDIQSLDHIFFSC--SAFSLDRLVFIDRLLCIY 427
S VC CN +S DH+FFSC S+ DRL LLC Y
Sbjct: 1278 SSVCVLCNISAESRDHLFFSCNFSSHIWDRLT-RRLLLCRY 1317
>UniRef50_Q08915 Cluster: Putative uncharacterized protein YOR392W;
n=1; Saccharomyces cerevisiae|Rep: Putative
uncharacterized protein YOR392W - Saccharomyces
cerevisiae (Baker's yeast)
Length = 147
Score = 33.5 bits (73), Expect = 5.4
Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -3
Query: 567 LFRINVLSSPVCNYCNNDIQSLDHIFFSCSAFSLD-RLVFIDRLLCIYGNVEDIPH 403
+++++VL SP C+ C ND Q F S S+ ++ ++ +C Y + IPH
Sbjct: 47 IYQVSVLKSPNCDNCKNDSQKDIFFFLSLYLSSIKIPMLILNIFICSYA-IFQIPH 101
>UniRef50_UPI0000D5776D Cluster: PREDICTED: similar to Hypothetical
115 kDa protein in type I retrotransposable element R1DM
(ORF 2); n=1; Tribolium castaneum|Rep: PREDICTED: similar
to Hypothetical 115 kDa protein in type I
retrotransposable element R1DM (ORF 2) - Tribolium
castaneum
Length = 973
Score = 32.7 bits (71), Expect = 9.4
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = -3
Query: 591 GHCRFNAHLFRINVLSSPVCNYCNNDIQSLDHIFFSCSAFSLDRLVFIDRLL 436
GH F +L RI + + C YC + + H FSCS F R+ + ++L
Sbjct: 877 GHGCFGTYLCRIGKILNASCWYCGEE-DTPSHTLFSCSYFDPLRMDVMKKIL 927
>UniRef50_Q9LJP6 Cluster: Non-LTR retroelement reverse
transcriptase-like protein; n=3; Arabidopsis
thaliana|Rep: Non-LTR retroelement reverse
transcriptase-like protein - Arabidopsis thaliana
(Mouse-ear cress)
Length = 637
Score = 32.7 bits (71), Expect = 9.4
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = -3
Query: 567 LFRINVLSSPVCNYCNNDIQSLDHIFFSC 481
L++ N + C +C+ ++++ DH+FFSC
Sbjct: 310 LYKWNSEARATCVFCDEELETRDHLFFSC 338
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 692,859,530
Number of Sequences: 1657284
Number of extensions: 13883322
Number of successful extensions: 27140
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26428
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27132
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58264468239
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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