Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0867
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    26   6.2  
SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase Wis1|Schizosaccha...    25   8.2  
SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual    25   8.2  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   8.2  

>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = -3

Query: 633 LIGGFIQPSVALRLGHCRFNAHLFRINVLSSPVCNYCNNDIQSLDH 496
           L+G     SV +   +C    HL+R    S   C+ C+N ++ LDH
Sbjct: 168 LVGSTRSDSVFVNTVYCH-TCHLYRPPRASH--CHLCDNCVEYLDH 210


>SPBC409.07c |wis1|spc2, smf2|MAP kinase kinase
           Wis1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 605

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/16 (62%), Positives = 12/16 (75%)
 Frame = -2

Query: 682 PNNVPISCSISGLRIS 635
           PNN P+SCS+  L IS
Sbjct: 4   PNNQPLSCSLRQLSIS 19


>SPCC736.08 |cbf11||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +1

Query: 517 VIAVITNWRRQNIDSKQMSIEAAMT*SQGDRWL 615
           V+++      Q + +K  SIEA     +GDRW+
Sbjct: 312 VVSLYNRINSQTVRTKYTSIEAGQFCLRGDRWV 344


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/32 (34%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +3

Query: 108  SFIISS*NKN-FNKAEAKSYIFSNPCKMANSS 200
            S++++  +KN  NK  + SY FS+P  + +S+
Sbjct: 1525 SYVLNKNSKNKSNKGRSASYTFSDPSSLEDSN 1556


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,010,850
Number of Sequences: 5004
Number of extensions: 63194
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)