Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0867
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0805 + 28184394-28185239                                         34   0.099
11_04_0459 - 17945840-17945971,17946042-17946351,17947379-179475...    31   0.70 
12_02_0820 + 23437811-23440230,23440336-23440534                       28   6.5  
10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296     28   6.5  

>04_04_0805 + 28184394-28185239
          Length = 281

 Score = 34.3 bits (75), Expect = 0.099
 Identities = 13/25 (52%), Positives = 19/25 (76%)
 Frame = -3

Query: 543 SPVCNYCNNDIQSLDHIFFSCSAFS 469
           +P+C+ C+ DI+S  HIF +C AFS
Sbjct: 167 APICHLCSKDIESCTHIFLNC-AFS 190


>11_04_0459 -
           17945840-17945971,17946042-17946351,17947379-17947514,
           17948123-17948253,17948337-17948710,17949194-17949246,
           17949973-17950288
          Length = 483

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -3

Query: 543 SPVCNYCNNDIQSLDHIFFSCS 478
           +P+C+ C+N  +S  HIF SCS
Sbjct: 54  APICHLCSNGGESCHHIFSSCS 75


>12_02_0820 + 23437811-23440230,23440336-23440534
          Length = 872

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 363 NF*IYRFNSWRYLKMGLQGFDEVMAPSITL 274
           NF  Y    ++YL+MGLQ F+E    +IT+
Sbjct: 642 NFSKYMPQFYQYLEMGLQNFEEYQVCAITV 671


>10_08_0817 - 20792817-20793360,20794061-20794156,20795193-20795296
          Length = 247

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = -3

Query: 588 HCRFNAHLFRINVLSSPVCNYCN 520
           +CR + HL R N  + PVCN CN
Sbjct: 145 NCRKSGHLAR-NCPNEPVCNLCN 166


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,721,571
Number of Sequences: 37544
Number of extensions: 351019
Number of successful extensions: 644
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)